Multiple change-point recombination detection
Installation:
install.packages(c("ape","rJava"))
library(devtools)
install_github("vnminin/rbrothers",build_vignettes=TRUE)
Demos:
We provide the following scripts demonstrating the usage of the package. E. coli fimH* (runs for about 2 minutes):
demo("fimH_example", package="rbrothers")
demo("salmonella_example", package="rbrothers")
For a list of demos available in the package, type
demo(package="rbrothers")
If you want to copy and modify one of the demo R scripts, you can use the system.file() command to find the location of the script in your tree directory:
system.file("demo", "fimH_example.R", package="rbrothers")
References:
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