README.md

In vsbuffalo/ProgenyArray: Some statistical genetics for progeny array experiments

ProgenyArray

ProgenyArray includes classes and methods for working with genotyping data from a progeny array.

This package implements some simple classes for storing data from a progeny array (half-sib) experiment, as well as some statistical genetics methods to do tasks like infer parentage and impute incorrect or missing genotype. These methods were designed to be robust to very noisy data; the project this is being applied to uses very low-coverage GBS data with about 40% data, 80% heterozygous error rate, and a 10% homozygous error rate.

vsbuffalo/ProgenyArray documentation built on May 3, 2019, 6:41 p.m.