Man pages for wStockhausen/rCompTCMs
Package to compare TCSAM2013, TCSAM02, and rsimTCSAM model runs

compareData.EffortTimeSeriesCompare effort time series data by fleet among several model...
compareData.FleetTimeSeriesCompare biomass time series data by fleet among several model...
compareData.GrowthDataCompare growth data among several model scenarios
compareDiffsFunction to compare differences of a quantity among several...
compareFits.BiomassDataCompare fits to biomass time series by fleet among several...
compareFits.EffectiveNsFunction to compare effective Ns from size compositions by...
compareFits.EffortDataCompare fits to effort data among several model runs
compareFits.GrowthDataCompare fits to growth data among several model runs
compareFits.MeanSizeCompsCompare fits to mean size comps by fleet among several model...
compareFits.SizeCompsCompare fits to size comps by fleet among several model runs
compareFits.ZScores.AbundanceCompare z-scores from fitting abundance time series by fleet...
compareFits.ZScores.BiomassCompare z-scores from fitting biomass time series by fleet...
compareFits.ZScores.PrNatZCompare Pearson's residuals or nll residuals from size comps...
compareResults.Fisheries.CatchabilityFunction to plot fishery catchabilities by year using ggplot2
compareResults.Fisheries.CatchAbundanceFunction to compare estimated fishery catch abundance by year...
compareResults.Fisheries.CatchBiomassFunction to compare estimated fishery catch biomass by year...
compareResults.Fisheries.RetFcnsFunction to compare fishery retention functions by year among...
compareResults.Fisheries.SelFcnsFunction to compare fishery selectivity functions by year...
compareResults.ParameterValuesFunction to compare cohort progression by year among several...
compareResults.Pop.AbundanceFunction to compare estimated population abundance by year...
compareResults.Pop.Abundance1Function to compare population abundance estimates by year...
compareResults.Pop.BiomassFunction to compare estimated population biomass by year...
compareResults.Pop.Biomass1Function to compare population biomass estimates by year...
compareResults.Pop.CohortProgressionFunction to compare cohort progression by year among several...
compareResults.Pop.GrowthMatricesCompare growth matrices among several model runs using bubble...
compareResults.Pop.GrowthMatrices.LinePlotsCompare growth matrices among several model runs using line...
compareResults.Pop.IF.NatZFunction to compare initial/final population abundance...
compareResults.Pop.MatureBiomassFunction to compare mature biomass-at-mating estimates by...
compareResults.Pop.MeanGrowthCompare mean post-molt size among several model runs
compareResults.Pop.NaturalMortalityFunction to plot natural mortality rates by year using...
compareResults.Pop.NatZ.LinePlotsFunction to compare population numbers-at-size estimates by...
compareResults.Pop.PrM2MCompare probability of molt-to-maturity among several model...
compareResults.Pop.ProcessesCompare population processes from TCSAM2013 and TCSAM02 model...
compareResults.Pop.QuantitiesCompare population quantities from TCSAM2013, TCSAM02, and...
compareResults.Pop.RecruitmentFunction to compare recruitment estimates by year among...
compareResults.Pop.RecSizeDistributionCompare recruitment size distributions among several model...
compareResults.Surveys.AbundanceFunction to compare estimated survey abundance by year among...
compareResults.Surveys.BiomassFunction to compare estimated survey biomass by year among...
compareResults.Surveys.CatchabilityFunction to plot survey catchabilities by year using ggplot2
compareResults.Surveys.SelFcnsFunction to compare survey selectivity functions by year...
computeDiffsCompute diiferences between model cases
extractFits.MeanSizeCompsExtract fits to mean size comps by fleet among several model...
extractFits.SizeCompsExtract fits to size comps by fleet from several model runs
extractFits.ZScores.PrNatZExtract Pearson's or nll residuals from size comps by fleet...
extractMDFR.ExploitationRatesFunction to extract exploitation rates by year among several...
extractMDFR.Fisheries.CatchabilityFunction to extract fishery catchabilities by year using...
extractMDFR.Fisheries.CatchAbundanceFunction to extract estimated fishery catch abundance by year...
extractMDFR.Fisheries.CatchBiomassFunction to extract estimated fishery catch biomass by year...
extractMDFR.Fisheries.RetFcnsFunction to extract fishery retention functions by year among...
extractMDFR.Fisheries.SelFcnsFunction to compare fishery selectivity functions by year...
extractMDFR.Fits.BiomassDataExtract fits to biomass time series by fleet among several...
extractMDFR.Fits.EffectiveNsFunction to extract effective Ns from size comps by year...
extractMDFR.Pop.AbundanceFunction to extract estimated population abundance by year...
extractMDFR.Pop.BiomassFunction to extract estimated population biomass by year...
extractMDFR.Pop.CohortProgressionFunction to extract cohort progression by year among several...
extractMDFR.Pop.GrowthMatricesExtract growth matrices among several model runs
extractMDFR.Pop.MatureBiomassFunction to extract mature biomass estimates by year among...
extractMDFR.Pop.MeanGrowthExtract mean post-molt size from several model runs
extractMDFR.Pop.NaturalMortalityFunction to plot natural mortality rates by year using...
extractMDFR.Pop.PrM2MExtract probability of molt-to-maturity from several model...
extractMDFR.Pop.RecruitmentFunction to extract recruitment estimates by year among...
extractMDFR.Pop.RecSizeDistributionExtract recruitment size distributions from several model...
extractMDFR.Results.ParametersAtBoundsExtract parameters at one of their bounds from several model...
extractMDFR.Results.ParameterValuesExtract parameter values (and associated std devs) from...
extractMDFR.Surveys.AbundanceFunction to extract estimated survey abundance by year among...
extractMDFR.Surveys.BiomassFunction to compare estimated survey biomass by year among...
extractMDFR.Surveys.CatchabilityFunction to extract survey catchabilities
extractMDFR.Surveys.SelFcnsFunction to extract survey selectivity functions by year...
getMDFR.CanonicalFormatConvert dataframe to canonical format
getResLstsCreate a list of TCSAM2013, TCSAM02 and rsimTCSAM resLst...
plotMDFR.BarLinePlot melted dataframe using a barchart/line-plot format.
plotMDFR.BarsPlot melted dataframe using a barchart format.
plotMDFR.BubblesCreate or add to a circle plot of age or size comp.s.
plotMDFR.Fits.SizeCompsPlot fits to size comps by fleet among several model runs...
plotMDFR.Fits.TimeSeriesPlot comparisons of fits to time series from a set of model...
plotMDFR.Fits.TimeSeries1Plot comparisons of fits to time series from a set of model...
plotMDFR.XYPlot melted dataframe using an xy-plot format.
plotZScoresPlot z-scores from a set of model runs
printResults.ParametersAtBoundsFunction to print a table of parameters at bounds for several...
printResults.ParameterValuesFunction to print a table of parameters from several models
wStockhausen/rCompTCMs documentation built on Sept. 13, 2017, 4:35 a.m.