API for wStockhausen/rTCSAM02
A set of tools to set up input for, and interact with output from, TCSAM02 model runs.

Global functions
calcTCSAM02Params Man page Source code
calcTCSAM02Params.FisheryCs Man page Source code
calcTCSAM02Params.NaturalMortality Man page Source code
calcTCSAM02Params.SelFcns Man page Source code
calcTCSAM02Params.SurveyQs Man page Source code
compareModels.PopQuants Man page Source code
extractMCMC.Var Source code
extractMCMC.Vars Source code
getMDFR Man page Source code
getMDFR.Data.EffortData Man page Source code
getMDFR.Data.FleetTimeSeries Man page Source code
getMDFR.Data.GrowthData Man page Source code
getMDFR.EffectiveNsForSizeComps Man page Source code
getMDFR.Fisheries.CatchAbundance Man page Source code
getMDFR.Fisheries.CatchBiomass Man page Source code
getMDFR.Fisheries.Catchability Man page Source code
getMDFR.Fisheries.RetFcns Man page Source code
getMDFR.Fisheries.SelFcns Man page Source code
getMDFR.Fits.EffectiveNs Man page Source code
getMDFR.Fits.EffortData Man page Source code
getMDFR.Fits.FleetData Man page Source code
getMDFR.Fits.GrowthData Man page Source code
getMDFR.FitsForABData Man page Source code
getMDFR.FitsForSizeComps Man page Source code
getMDFR.OFCs.DataComponents Man page Source code
getMDFR.OFCs.EffortData Man page Source code
getMDFR.OFCs.FDevPenalties Man page Source code
getMDFR.OFCs.FleetData Man page Source code
getMDFR.OFCs.GrowthData Man page Source code
getMDFR.OFCs.NonDataComponents Man page Source code
getMDFR.OFLResults Man page Source code
getMDFR.ParameterValues Man page Source code
getMDFR.ParametersAtBounds Man page Source code
getMDFR.Pop.Abundance Man page Source code
getMDFR.Pop.Biomass Man page Source code
getMDFR.Pop.CohortProgression Man page Source code
getMDFR.Pop.GrowthMatrices Man page Source code
getMDFR.Pop.MeanGrowth Man page Source code
getMDFR.Pop.NaturalMortality Man page Source code
getMDFR.Pop.PrM2M Man page Source code
getMDFR.Pop.Quantities Man page Source code
getMDFR.Pop.RecSizeDistribution Man page Source code
getMDFR.Pop.SexRatio Man page Source code
getMDFR.Surveys.Abundance Man page Source code
getMDFR.Surveys.Biomass Man page Source code
getMDFR.Surveys.Catchability Man page Source code
getMDFR.Surveys.SelFcns Man page Source code
getMDFR.ZScores.Abundance Man page Source code
getMDFR.ZScores.Biomass Man page Source code
getMDFR.ZScores.PrNatZ Man page Source code
getMDFR.ZScores.PrNatZ1 Man page Source code
getMDFR.ZScoresForABData Man page Source code
getOFCs Man page Source code
getObj Man page Source code
getPrs Man page Source code
getRep Man page Source code
getResLst Man page Source code
getResLsts Man page Source code
getRunCommands Man page Source code
getStd Man page Source code
readParFile Man page Source code
readParamsCSV Man page Source code
reformatTimeBlocks Man page Source code
removeImmOS Man page Source code
runJitter Man page Source code
runTCSAM02 Man page Source code
wStockhausen/rTCSAM02 documentation built on Sept. 13, 2017, 4:36 a.m.