API for wStockhausen/rTCSAM02
A set of tools to set up input for, and interact with output from, TCSAM02 model runs
| Global functions | |
|---|---|
| calcTCSAM02Params | Man page Source code |
| calcTCSAM02Params.FisheryCs | Man page Source code |
| calcTCSAM02Params.NaturalMortality | Man page Source code |
| calcTCSAM02Params.SelFcns | Man page Source code |
| calcTCSAM02Params.SurveyQs | Man page Source code |
| compareModels.PopQuants | Man page Source code |
| createRep | Man page Source code |
| createResLst | Man page Source code |
| findOptDiffByCat | Source code |
| findOptDiffs | Source code |
| getCorr | Man page Source code |
| getMDFR | Man page Source code |
| getMDFR.AllScores.Abundance | Man page Source code |
| getMDFR.AllScores.Abundance1 | Man page Source code |
| getMDFR.AllScores.Biomass | Man page Source code |
| getMDFR.AllScores.Biomass1 | Man page Source code |
| getMDFR.AllScoresForABData | Man page Source code |
| getMDFR.CanonicalFormat | Man page Source code |
| getMDFR.Data.ChelaHeightData | Man page Source code |
| getMDFR.Data.EffortData | Man page Source code |
| getMDFR.Data.FleetSizeComps | Man page Source code |
| getMDFR.Data.FleetTimeSeries | Man page Source code |
| getMDFR.Data.GrowthData | Man page Source code |
| getMDFR.Data.MaturityOgiveData | Man page Source code |
| getMDFR.Data.TimeFrames | Man page Source code |
| getMDFR.EffectiveNsForSizeComps | Man page Source code |
| getMDFR.Fisheries.CatchAbundance | Man page Source code |
| getMDFR.Fisheries.CatchBiomass | Man page Source code |
| getMDFR.Fisheries.Catchability | Man page Source code |
| getMDFR.Fisheries.RetFcns | Man page Source code |
| getMDFR.Fisheries.SelFcns | Man page Source code |
| getMDFR.Fits.ChelaHeightData | Man page Source code |
| getMDFR.Fits.EffectiveNs | Man page Source code |
| getMDFR.Fits.EffortData | Man page Source code |
| getMDFR.Fits.FleetData | Man page Source code |
| getMDFR.Fits.GrowthData | Man page Source code |
| getMDFR.Fits.MaturityOgiveData | Man page Source code |
| getMDFR.FitsForABData | Man page Source code |
| getMDFR.FitsForSizeComps | Man page Source code |
| getMDFR.ManagementQuantities | Man page Source code |
| getMDFR.OFCs.ChelaHeightData | Man page Source code |
| getMDFR.OFCs.DataComponents | Man page Source code |
| getMDFR.OFCs.EffortData | Man page Source code |
| getMDFR.OFCs.FDevPenalties | Man page Source code |
| getMDFR.OFCs.FleetData | Man page Source code |
| getMDFR.OFCs.GrowthData | Man page Source code |
| getMDFR.OFCs.MaturityOgiveData | Man page Source code |
| getMDFR.OFCs.NonDataComponents | Man page Source code |
| getMDFR.OFLResults | Man page Source code |
| getMDFR.ParameterValues | Man page Source code |
| getMDFR.ParametersAtBounds | Man page Source code |
| getMDFR.Pop.Abundance | Man page Source code |
| getMDFR.Pop.Biomass | Man page Source code |
| getMDFR.Pop.CohortProgression | Man page Source code |
| getMDFR.Pop.GrowthMatrices | Man page Source code |
| getMDFR.Pop.MaturityOgives | Man page Source code |
| getMDFR.Pop.MeanGrowth | Man page Source code |
| getMDFR.Pop.NaturalMortality | Man page Source code |
| getMDFR.Pop.PrM2M | Man page Source code |
| getMDFR.Pop.Quantities | Man page Source code |
| getMDFR.Pop.RecSizeDistribution | Man page Source code |
| getMDFR.Pop.SexRatio | Man page Source code |
| getMDFR.SdRep.DerivedVars | Man page Source code |
| getMDFR.SdRep.RecAndSSB | Man page Source code |
| getMDFR.Surveys.Abundance | Man page Source code |
| getMDFR.Surveys.Availability | Man page Source code |
| getMDFR.Surveys.AvlFcns | Man page Source code |
| getMDFR.Surveys.Biomass | Man page Source code |
| getMDFR.Surveys.CaptureProbs | Man page Source code |
| getMDFR.Surveys.Catchability | Man page Source code |
| getMDFR.Surveys.MaturityOgives | Man page Source code |
| getMDFR.Surveys.SelFcns | Man page Source code |
| getMDFR.ZScores.Abundance | Man page Source code |
| getMDFR.ZScores.Abundance.old | Man page Source code |
| getMDFR.ZScores.Biomass | Man page Source code |
| getMDFR.ZScores.PrNatZ | Man page Source code |
| getMDFR.ZScores.PrNatZ1 | Man page Source code |
| getOFCs | Man page Source code |
| getObj | Man page Source code |
| getPrs | Man page Source code |
| getRep | Man page Source code |
| getResLst | Man page Source code |
| getResLsts | Man page Source code |
| getRunCommands | Man page Source code |
| getStd | Man page Source code |
| mcmc.CalcABC | Man page Source code |
| mcmc.ExtractOFLResults | Man page Source code |
| mcmc.ExtractVar | Man page Source code |
| mcmc.ExtractVars | Man page Source code |
| mcmc.InvertArrayElement | Man page Source code |
| mcmc.InvertListElement | Man page Source code |
| mcmc.InvertMCMCList | Man page Source code |
| mcmc.InvertNumberElement | Man page Source code |
| mcmc.InvertVectorElement | Man page Source code |
| mcmc.PlotABC | Man page Source code |
| mcmc.ReadMCMC | Man page Source code |
| plotDynamicB0 | Man page Source code |
| plotMQs.QuadPlot | Man page Source code |
| readCorFile | Man page Source code |
| readParFile | Man page Source code |
| readParamsCSV | Man page Source code |
| reformatTimeBlocks | Man page Source code |
| removeImmOS | Man page Source code |
| runJitter | Man page Source code |
| runMSE | Man page Source code |
| runTCSAM02 | Man page Source code |
| sdRep.CalcABC | Man page Source code |
| sdRep.PlotABC | Man page Source code |
| writeOldProjectionModelFile | Source code |
