Files in wStockhausen/rTCSAM02
A set of tools to set up input for, and interact with output from, TCSAM02 model runs.

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/calcTCSAM02Params.FisheryCs.R R/calcTCSAM02Params.NaturalMortality.R R/calcTCSAM02Params.R R/calcTCSAM02Params.SelFcns.R R/calcTCSAM02Params.SurveyQs.R R/compareModels.PopQuants.R R/createRep.R R/createResLst.R R/extractMCMC.Vars.R R/getMDFR.Data.EffortData.R R/getMDFR.Data.FleetTimeSeries.R R/getMDFR.Data.GrowthData.R R/getMDFR.EffectiveNsForSizeComps.R R/getMDFR.Fisheries.CatchAbundance.R R/getMDFR.Fisheries.CatchBiomass.R R/getMDFR.Fisheries.Catchability.R R/getMDFR.Fisheries.RetFcns.R R/getMDFR.Fisheries.SelFcns.R R/getMDFR.Fits.EffectiveNs.R R/getMDFR.Fits.EffortData.R R/getMDFR.Fits.FleetData.R R/getMDFR.Fits.GrowthData.R R/getMDFR.Fits.MaturityData.R R/getMDFR.FitsForABData.R R/getMDFR.FitsForSizeComps.R R/getMDFR.OFCs.DataComponents.R R/getMDFR.OFCs.EffortData.R R/getMDFR.OFCs.FleetData.R R/getMDFR.OFCs.GrowthData.R R/getMDFR.OFCs.MaturityData.R R/getMDFR.OFCs.NonDataComponents.R R/getMDFR.OFLResults.R R/getMDFR.ParameterValues.R R/getMDFR.ParametersAtBounds.R R/getMDFR.Pop.Abundance.R R/getMDFR.Pop.Biomass.R R/getMDFR.Pop.CohortProgression.R R/getMDFR.Pop.GrowthMatrices.R R/getMDFR.Pop.MaturityOgives.R R/getMDFR.Pop.MeanGrowth.R R/getMDFR.Pop.NaturalMortality.R R/getMDFR.Pop.Quantities.R R/getMDFR.Pop.RecSizeDistribution.R R/getMDFR.Pop.SexRatio.R R/getMDFR.Pop.prM2M.R R/getMDFR.R R/getMDFR.Surveys.Abundance.R R/getMDFR.Surveys.Biomass.R R/getMDFR.Surveys.CaptureProbs.R R/getMDFR.Surveys.Catchability.R R/getMDFR.Surveys.MaturityOgives.R R/getMDFR.Surveys.SelFcns.R R/getMDFR.ZScores.Abundance.R R/getMDFR.ZScores.Biomass.R R/getMDFR.ZScores.PrNatZ.R R/getMDFR.ZScores.PrNatZ1.R R/getMDFR.ZScoresForABData.R R/getOFCs.R R/getObj.R R/getPrs.R R/getRep.R R/getResLst.R R/getResLsts.R R/getRunCommands.R R/getStd.R R/mcmc.CalcABC.R R/mcmc.ExtractOFLResults.R R/mcmc.InvertList.R R/mcmc.InvertListElement.R R/mcmc.ReadMCMC.R R/plotABC.R R/plotDynamicB0.R R/readParFile.R R/readParamsCSV.R R/reformatTimeBlocks.R R/removeImmOS.R R/runJitter.R R/runTCSAM02.R R/writeOldProjectionModelFile.R README.md man/calcTCSAM02Params.FisheryCs.Rd man/calcTCSAM02Params.NaturalMortality.Rd man/calcTCSAM02Params.Rd man/calcTCSAM02Params.SelFcns.Rd man/calcTCSAM02Params.SurveyQs.Rd man/compareModels.PopQuants.Rd man/createRep.Rd man/createResLst.Rd man/getMDFR.Data.EffortData.Rd man/getMDFR.Data.FleetTimeSeries.Rd man/getMDFR.Data.GrowthData.Rd man/getMDFR.EffectiveNsForSizeComps.Rd man/getMDFR.Fisheries.CatchAbundance.Rd man/getMDFR.Fisheries.CatchBiomass.Rd man/getMDFR.Fisheries.Catchability.Rd man/getMDFR.Fisheries.RetFcns.Rd man/getMDFR.Fisheries.SelFcns.Rd man/getMDFR.Fits.EffectiveNs.Rd man/getMDFR.Fits.EffortData.Rd man/getMDFR.Fits.FleetData.Rd man/getMDFR.Fits.GrowthData.Rd man/getMDFR.Fits.MaturityData.Rd man/getMDFR.FitsForABData.Rd man/getMDFR.FitsForSizeComps.Rd man/getMDFR.OFCs.DataComponents.Rd man/getMDFR.OFCs.EffortData.Rd man/getMDFR.OFCs.FDevPenalties.Rd man/getMDFR.OFCs.FleetData.Rd man/getMDFR.OFCs.GrowthData.Rd man/getMDFR.OFCs.MaturityData.Rd man/getMDFR.OFCs.NonDataComponents.Rd man/getMDFR.OFLResults.Rd man/getMDFR.ParameterValues.Rd man/getMDFR.ParametersAtBounds.Rd man/getMDFR.Pop.Abundance.Rd man/getMDFR.Pop.Biomass.Rd man/getMDFR.Pop.CohortProgression.Rd man/getMDFR.Pop.GrowthMatrices.Rd man/getMDFR.Pop.MaturityOgives.Rd man/getMDFR.Pop.MeanGrowth.Rd man/getMDFR.Pop.NaturalMortality.Rd man/getMDFR.Pop.PrM2M.Rd man/getMDFR.Pop.Quantities.Rd man/getMDFR.Pop.RecSizeDistribution.Rd man/getMDFR.Pop.SexRatio.Rd man/getMDFR.Rd man/getMDFR.Surveys.Abundance.Rd man/getMDFR.Surveys.Biomass.Rd man/getMDFR.Surveys.CaptureProbs.Rd man/getMDFR.Surveys.Catchability.Rd man/getMDFR.Surveys.MaturityOgives.Rd man/getMDFR.Surveys.SelFcns.Rd man/getMDFR.ZScores.Abundance.Rd man/getMDFR.ZScores.Biomass.Rd man/getMDFR.ZScores.PrNatZ.Rd man/getMDFR.ZScores.PrNatZ1.Rd man/getMDFR.ZScoresForABData.Rd man/getOFCs.Rd man/getObj.Rd man/getPrs.Rd man/getRep.Rd man/getResLst.Rd man/getResLsts.Rd man/getRunCommands.Rd man/getStd.Rd man/mcmc.CalcABC.Rd man/mcmc.ExtractOFLResults.Rd man/mcmc.InvertList.Rd man/mcmc.InvertListElement.Rd man/mcmc.ReadMCMC.Rd man/plotABC.Rd man/plotDynamicB0.Rd man/readParFile.Rd man/readParamsCSV.Rd man/reformatTimeBlocks.Rd man/removeImmOS.Rd man/runJitter.Rd man/runTCSAM02.Rd
rTCSAM02.Rproj
wStockhausen/rTCSAM02 documentation built on Sept. 2, 2018, 8:26 p.m.