getFileNames: Find the file names used in RTCGAToolbox

Description Usage Arguments Value Examples

View source: R/getFileNames.R

Description

Part of this function is from the RTCGAToolbox. It aims to extract the file name used inside of the getFirehoseData function. The arguments of the function parallel those in the getFirehoseData function. It is only available for select data types.

Usage

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getFileNames(disease, runDate = "20160128", CNASNP = FALSE,
  CNVSNP = FALSE, CNASeq = FALSE, CNACGH = FALSE)

Arguments

disease

The TCGA cancer disease code, e.g., "COAD"

runDate

The single string used in the getFirehoseData function (default "20160128")

CNASNP

A logical (default = FALSE) vector indicating whether to get the file name from this data type

CNVSNP

A logical (default = FALSE) vector indicating whether to get the file name from this data type

CNASeq

A logical (default = FALSE) vector indicating whether to get the file name from this data type

CNACGH

A logical (default = FALSE) vector indicating whether to get the file name from this data type

Value

A character vector of length one indicating the file name

Examples

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getFileNames("COAD", CNVSNP = TRUE)

waldronlab/BiocInterfaces documentation built on Nov. 16, 2018, 1:19 a.m.