mirToRanges: Convert SummarizedExperiment elements with microRNA to...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/simplifyTCGA.R

Description

Convert SummarizedExperiment elements with microRNA to RangedSummarizedExperiment

Usage

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mirToRanges(obj, keep = FALSE)

Arguments

obj

A MultiAssayExperiment object obtained from curatedTCGAData

keep

If FALSE (default), remove the SummarizedExperiment objects that have been converted to RangedSummarizedExperiment

Value

a MultiAssayExperiment where any of the original SummarizedExperiment containing gene symbols as rownames have been replaced or supplemented by a RangedSummarizedExperiment for miR that could be mapped to GRanges, and another SummarizedExperiment for miR that could not be mapped to GRanges.

Author(s)

L. Waldron

See Also

symbolsToRanges

Examples

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library(curatedTCGAData)

accmae <- curatedTCGAData("ACC", "miRNASeqGene", dry.run = FALSE)

mirToRanges(accmae)

waldronlab/BiocInterfaces documentation built on Nov. 16, 2018, 1:19 a.m.