API for waldronlab/TCGAmisc
TCGA utility functions for data management

Global functions
ID-translation Man page
TCGAbarcode Man page Source code
TCGAbiospec Man page Source code
TCGAsampleSelect Man page Source code
TCGAutils Man page
TCGAutils-package Man page
UUIDtoBarcode Man page Source code
UUIDtoUUID Man page Source code
barcodeEndpoint Source code
barcodeToUUID Man page Source code
buildIDframe Source code
cMAE Source code
checkBarcodes Source code
checkPkgsAvail Source code
clinicalNames Man page
collect_prefixes Source code
collect_suffixes Source code
curatedTCGAData-helpers Man page
diseaseCodes Man page
extractBuild Man page Source code
filenameToBarcode Man page Source code
findBarcodeCol Source code
findBarcodeLimit Source code
findGRangesCols Man page Source code
findNAColumns Source code
find_seqnames_col Source code
find_start_end_cols Source code
find_strands_col Source code
find_width_col Source code
find_with_xfix Source code
generateMap Man page Source code
getClinicalNames Man page Source code
getFileNames Man page Source code
getLinks Source code
getRangesOfMir Source code
getRangesOfSYMBOLS Source code
getSubtypeMap Man page Source code
hasMir Source code
hasSymbols Source code
imputeAssay Man page Source code
makeGRangesListFromCopyNumber Man page Source code
makeGRangesListFromExonFiles Man page Source code
makeListRanges Source code
makeSummarizedExperimentFromGISTIC Man page Source code
mergeColData Man page Source code
mirToRanges Man page Source code
qreduceTCGA Man page Source code
sSummarizedExperiment Source code
sampleTables Man page Source code
sampleTypes Man page
simplifyTCGA Man page Source code
splitAssays Man page Source code
standardBarcodes Source code
strsep Source code
symbolsToRanges Man page Source code
translateBuild Man page Source code
uniformBuilds Man page Source code
uniqueDelim Source code
waldronlab/TCGAmisc documentation built on Aug. 7, 2018, 1:35 a.m.