Files in waldronlab/TCGAmisc
TCGA utility functions for data management
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/ID-translation.R
R/TCGAbarcode.R
R/TCGAbiospec.R
R/TCGAprimaryTumors.R
R/TCGAsampleSelect.R
R/TCGAutils-pkg.R
R/builds.R
R/curatedTCGAData-helpers.R
R/data.R
R/findGRangesCols.R
R/generateMap.R
R/getFileName.R
R/imputeAssay.R
R/makeGRangesListFromCopyNumber.R
R/makeGRangesListFromExonFiles.R
R/oncoPrintTCGA.R
R/simplifyColData.R
R/simplifyTCGA.R
R/utils.R
README.md
appveyor.yml
data/clinicalNames.rda
data/diseaseCodes.rda
data/sampleTypes.rda
inst/extdata/blca_cnaseq.R
inst/extdata/blca_cnaseq.txt
inst/extdata/bt.exon_quant.R
inst/extdata/bt.exon_quantification.txt
inst/scripts/clinicalNames.R
inst/scripts/diseaseCodes.R
inst/scripts/sampleTypes.R
man/ID-translation.Rd
man/TCGAbarcode.Rd
man/TCGAbiospec.Rd
man/TCGAprimaryTumors.Rd
man/TCGAsampleSelect.Rd
man/TCGAutils-package.Rd
man/builds.Rd
man/clinicalNames.Rd
man/curatedTCGAData-helpers.Rd
man/diseaseCodes.Rd
man/findGRangesCols.Rd
man/generateMap.Rd
man/getFileName.Rd
man/hidden-helpers.Rd
man/imputeAssay.Rd
man/makeGRangesListFromCopyNumber.Rd
man/makeGRangesListFromExonFiles.Rd
man/mergeColData.Rd
man/oncoPrintTCGA.Rd
man/sampleTypes.Rd
man/simplifyTCGA.Rd
man/trimColData.Rd
tests/testthat.R
tests/testthat/test-ID-translation.R
tests/testthat/test-builds.R
tests/testthat/test-identifiers.R
vignettes/TCGAutils.Rmd
