Fast calculation of uniConSig and CSEA

cal_conceptWeight | calculate concept weight |

cal_cumNorWeight | Calculate cumulative normalized weights |

cal_uniConSig | calculate uniConSig using pre-calculated files |

cal_weightMatrix | load concept database from gmt, calculate concept weights,... |

construct_permuList | contruct permutation list |

CSEA | Calculate CSEA |

findES | Find the highest absolute value of weights |

get_data_uniConSigPreCal | Fetch pre-calculated data from github for uniConSig... |

pathway.c2cp | Pathway gene sets of C2CP from MSigDB |

pathway.hallmark | Pathway gene sets of HALLMARK from MSigDB |

perm_weightedKS_ofCSEA | Calculate the permutations of random on-set genes |

preCal.data | pre-calculated penalization factors and molecular concepts... |

trList.cgc | Cancer gene sets from Cancer Gene Census |

uniConSig-package | Calculate uniConSig scores using pre-calculated files |

weightedKS_ofCSEA | Calculate weighted random walk k-s test for CSEA |

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