Files in wilkox/gggenes
Draw Gene Arrow Maps in 'ggplot2'
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/data.R
R/expect_doppelganger.R
R/geom_feature.R
R/geom_feature_label.R
R/geom_gene_arrow.R
R/geom_gene_label.R
R/geom_subgene_arrow.R
R/geom_subgene_label.R
R/geom_terminator.R
R/geom_terminator_label.R
R/gggenes-package.R
R/make_alignment_dummies.R
R/theme_genes.R
R/utilities.R
README.Rmd
README.md
_pkgdown.yml
cran-comments.md
data/example_dummies.rda
data/example_features.rda
data/example_features_polar.rda
data/example_genes.rda
data/example_genes_polar.rda
data/example_subgenes.rda
data/example_subgenes_polar.rda
data/example_terminators.rda
data/example_terminators_polar.rda
docs/404.html
docs/articles/index.html
docs/articles/introduction-to-gggenes.html
docs/articles/introduction-to-gggenes_files/anchor-sections-1.0/anchor-sections.css
docs/articles/introduction-to-gggenes_files/anchor-sections-1.0/anchor-sections.js
docs/articles/introduction-to-gggenes_files/figure-html/geom_gene_arrow-1.png
docs/articles/introduction-to-gggenes_files/figure-html/labelled_genes-1.png
docs/articles/introduction-to-gggenes_files/figure-html/make_alignment_dummies-1.png
docs/articles/introduction-to-gggenes_files/figure-html/reversing_direction-1.png
docs/articles/introduction-to-gggenes_files/figure-html/subgene labels-1.png
docs/articles/introduction-to-gggenes_files/figure-html/subgenes-1.png
docs/articles/introduction-to-gggenes_files/figure-html/theme_genes-1.png
docs/articles/introduction-to-gggenes_files/figure-html/unnamed-chunk-2-1.png
docs/articles/introduction-to-gggenes_files/header-attrs-2.5/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/example_dummies.html
docs/reference/example_features.html
docs/reference/example_genes.html
docs/reference/figures/README-geom_gene_arrow-1.png
docs/reference/figures/README-labelled_genes-1.png
docs/reference/figures/README-make_alignment_dummies-1.png
docs/reference/figures/README-reversing_direction-1.png
docs/reference/figures/README-subgene_labels-1.png
docs/reference/figures/README-subgenes-1.png
docs/reference/figures/README-theme_genes-1.png
docs/reference/figures/README-unnamed-chunk-2-1.png
docs/reference/geom_feature-1.png
docs/reference/geom_feature.html
docs/reference/geom_feature_label-1.png
docs/reference/geom_feature_label.html
docs/reference/geom_gene_arrow-1.png
docs/reference/geom_gene_arrow.html
docs/reference/geom_gene_label-1.png
docs/reference/geom_gene_label.html
docs/reference/geom_subgene_arrow-1.png
docs/reference/geom_subgene_arrow.html
docs/reference/geom_subgene_label.html
docs/reference/gggenes.html
docs/reference/index.html
docs/reference/make_alignment_dummies-1.png
docs/reference/make_alignment_dummies.html
docs/reference/theme_genes-1.png
docs/reference/theme_genes.html
docs/sitemap.xml
inst/WORDLIST
man/example_dummies.Rd
man/example_features.Rd
man/example_genes.Rd
man/example_terminators.Rd
man/figures/README-geom_gene_arrow-1.png
man/figures/README-labelled_genes-1.png
man/figures/README-make_alignment_dummies-1.png
man/figures/README-reversing_direction-1.png
man/figures/README-subgene_labels-1.png
man/figures/README-subgenes-1.png
man/figures/README-theme_genes-1.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-4-1.png
man/geom_feature.Rd
man/geom_feature_label.Rd
man/geom_gene_arrow.Rd
man/geom_gene_label.Rd
man/geom_subgene_arrow.Rd
man/geom_subgene_label.Rd
man/geom_terminator.Rd
man/geom_terminator_label.Rd
man/gggenes-package.Rd
man/make_alignment_dummies.Rd
man/theme_genes.Rd
revdep/.gitignore
revdep/README.md
revdep/email.yml
revdep/failures.md
revdep/problems.md
tests/figs/deps.txt
tests/figs/geom-subgene-arrow/basic-plot-with-subgenes.svg
tests/figs/visual-tests-of-plots/basic-plot-with-features.svg
tests/figs/visual-tests-of-plots/basic-plot-with-labelled-features.svg
tests/figs/visual-tests-of-plots/basic-plot.svg
tests/figs/visual-tests-of-plots/plot-in-flipped-coordinates.svg
tests/figs/visual-tests-of-plots/plot-using-forward-aesthetic.svg
tests/figs/visual-tests-of-plots/plot-with-features-and-non-logical-forward.svg
tests/figs/visual-tests-of-plots/plot-with-geom-gene-label.svg
tests/figs/visual-tests-of-plots/plot-with-labelled-subgenes.svg
tests/figs/visual-tests-of-plots/plot-with-make-alignment-dummies.svg
tests/figs/visual-tests-of-plots/plot-with-subgenes.svg
tests/figs/visual-tests-of-plots/plot-with-theme-genes.svg
tests/figs/visual-tests-of-plots/subgene-plot-in-flipped-coords.svg
tests/spelling.R
tests/testthat.R
tests/testthat/_snaps/feature/geom-feature-and-geom-feature-label-in-flipped-coordinates.svg
tests/testthat/_snaps/feature/geom-feature-and-geom-feature-label-in-polar-coordinates.svg
tests/testthat/_snaps/feature/geom-feature-geom-feature-label-in-cartesian-coordinates.svg
tests/testthat/_snaps/feature/geom-feature-with-numeric-forward.svg
tests/testthat/_snaps/gene_arrow/gene-arrow-and-label-in-cartesian-coordinates.svg
tests/testthat/_snaps/gene_arrow/gene-arrow-and-label-in-flipped-coordinates.svg
tests/testthat/_snaps/gene_arrow/gene-arrow-and-label-in-polar-coordinates.svg
tests/testthat/_snaps/make_alignment_dummies/make-alignment-dummies-aligned-on-gene.svg
tests/testthat/_snaps/subgene_arrow/subgene-arrow-and-label-in-cartesian-coordinates.svg
tests/testthat/_snaps/subgene_arrow/subgene-arrow-and-label-in-flipped-coordinates.svg
tests/testthat/_snaps/terminator/terminator-and-label-in-cartesian-coordinates.svg
tests/testthat/_snaps/terminator/terminator-and-label-in-flipped-coordinates.svg
tests/testthat/_snaps/terminator/terminator-and-label-in-polar-coordinates.svg
tests/testthat/helpers.R
tests/testthat/test-feature.R
tests/testthat/test-gene_arrow.R
tests/testthat/test-make_alignment_dummies.R
tests/testthat/test-subgene_arrow.R
tests/testthat/test-terminator.R
vignettes/introduction-to-gggenes.Rmd
