Files in wpeterman/ResistanceGA
Optimize resistance surfaces using genetic algorithms
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/Bootstrap_function.R
R/CS_prep.R
R/Combine_Surfaces.R
R/Combine_Surfaces_scale.R
R/Diagnostic_Plots.R
R/GA_prep.R
R/Grid_Search.R
R/MLPE.R
R/MS_optim.R
R/MS_optim_scale.R
R/OptimFunction_Multi.R
R/OptimFunction_Multi_covariate.R
R/OptimFunction_Multi_scale.R
R/OptimFunction_Single.R
R/OptimFunction_Single_covariate.R
R/OptimFunction_Single_scale.R
R/Plot_trans.R
R/ResistanceGA.R
R/Resistance_transform.R
R/Run_CS.R
R/Run_gdistance.R
R/Run_julia.R
R/SHNe.R
R/SS_optim.R
R/SS_optim_scale.R
R/Transformation_functions.R
R/all_comb.R
R/gdistance.R
R/internal_helper_functions.R
R/julia_prep.R
R/k_smooth.R
R/lower_matrix.R
R/rga_mlpe.R
R/to_from.R
R/utils-pipe.R
R/write_CS_file.R
README.md
ResistanceGA.Rproj
data/Dc_list.rda
data/jl_out.rda
data/raster_orig.rda
data/raster_true.rda
data/resist_list.rda
data/resistance_surfaces.rda
data/sample_pops.rda
data/samples.rda
figure/Grid.Surface.png
figure/Grid.Surface.svg
figure/Grid_Search_example.png
figure/RickerPlot.png
figure/RickerPlot2.png
figure/Transformations.png
figure/Transformations.svg
figure/Transformations_ORIG.svg
figure/combine_surfaces.png
figure/combined_plots.png
figure/combined_plots1.png
figure/combined_plots2.png
figure/combined_plots3.png
figure/correlation_plot.png
figure/cs_resposne_multi.png
figure/feature_sim.png
figure/inverse-reverse_mono.png
figure/monomolec_plot.png
figure/multi_surface_sim1.png
figure/multi_surface_sim2.png
figure/plot_trans_demo1.png
figure/plot_trans_demo2.png
figure/single_surface_plot.png
figure/trans_plots.png
figure/unnamed-chunk-5.png
figure/unnamed-chunk-6.png
inst/CITATION
man/CS.prep.Rd
man/Combine_Surfaces.Rd
man/Dc_list.Rd
man/Diagnostic.Plots.Rd
man/GA.prep.Rd
man/Grid.Search.Rd
man/MLPE.lmm.Rd
man/MS_optim.Rd
man/Plot.trans.Rd
man/Resist.boot.Rd
man/Resistance.tran.Rd
man/ResistanceGA-package.Rd
man/Run_CS.Rd
man/Run_CS.jl.Rd
man/Run_gdistance.Rd
man/SHNe.Rd
man/SS_optim.Rd
man/To.From.ID.Rd
man/all_comb.Rd
man/gdist.prep.Rd
man/jl.prep.Rd
man/jl_out.Rd
man/k.smooth.Rd
man/lower.Rd
man/mlpe_rga.Rd
man/pipe.Rd
man/raster_orig.Rd
man/raster_true.Rd
man/resist_list.Rd
man/resistance_surfaces.Rd
man/sample_pops.Rd
man/samples.Rd
vignettes/GettingStarted.R
vignettes/GettingStarted.Rmd
vignettes/GettingStarted.html
vignettes/Julia_Guide.R
vignettes/Julia_Guide.Rmd
vignettes/Julia_Guide.html
vignettes/ResistanceGA.R
vignettes/ResistanceGA.Rmd
vignettes/ResistanceGA.html
vignettes/ResistanceGA.pdf
vignettes/ResistanceGA_files/figure-latex/Plot.trans.demo-1.pdf
vignettes/ResistanceGA_files/figure-latex/Plot.trans.demo-2.pdf
vignettes/ResistanceGA_files/figure-latex/feature.sim-1.pdf
vignettes/ResistanceGA_files/figure-latex/feature.sim-2.pdf
vignettes/ResistanceGA_files/figure-latex/feature.sim-3.pdf
vignettes/ResistanceGA_files/figure-latex/single.surface.plot-1.pdf
vignettes/_SYNCAPP/metadata.xml
vignettes/figure/CS_corr.png
vignettes/figure/FlowChart_Narrow2.png
vignettes/figure/FlowChart_Narrow2.tif
vignettes/figure/FlowChart_Narrow2b.png
vignettes/figure/Grid.Surface.png
vignettes/figure/Grid.Surface.svg
vignettes/figure/IR_Mono.png
vignettes/figure/Plot.trans.demo-1.png
vignettes/figure/Plot.trans.demo-2.png
vignettes/figure/Raindow_Surface.png
vignettes/figure/RickerPlot.png
vignettes/figure/RickerPlot2.png
vignettes/figure/Transformations.png
vignettes/figure/Transformations.svg
vignettes/figure/Transformations_ORIG.svg
vignettes/figure/combine.surfaces.png
vignettes/figure/combine_cs.png
vignettes/figure/combine_surfaces.png
vignettes/figure/combined.plots.png
vignettes/figure/combined_plots.png
vignettes/figure/combined_plots1.png
vignettes/figure/combined_plots2.png
vignettes/figure/correlation_plot.png
vignettes/figure/example_analysis.png
vignettes/figure/example_demo_pair.png
vignettes/figure/feature.sim-1.png
vignettes/figure/feature.sim-2.png
vignettes/figure/feature.sim-3.png
vignettes/figure/feature.sim.png
vignettes/figure/feature.sim1.png
vignettes/figure/feature.sim2.png
vignettes/figure/feature.sim3.png
vignettes/figure/feature_sim.png
vignettes/figure/grid1.png
vignettes/figure/grid2.png
vignettes/figure/grid_topo.png
vignettes/figure/monomolec.plot-1.png
vignettes/figure/monomolec.plot.png
vignettes/figure/monomolec_plot.png
vignettes/figure/multi_surface.sim1.png
vignettes/figure/multi_surface.sim2.png
vignettes/figure/multi_surface_sim1.png
vignettes/figure/multi_surface_sim2.png
vignettes/figure/noisy_genetic.png
vignettes/figure/plot.trans.demo1.png
vignettes/figure/plot.trans.demo2.png
vignettes/figure/plot_trans_demo1.png
vignettes/figure/plot_trans_demo2.png
vignettes/figure/plotcorrelation_plot.png
vignettes/figure/pre.smooth_plot.png
vignettes/figure/response_dist.png
vignettes/figure/reverse.ricker-1.png
vignettes/figure/reverse.ricker.png
vignettes/figure/reverse_ricker.png
vignettes/figure/single.surface.plot-1.png
vignettes/figure/single.surface.plot.png
vignettes/figure/single_surface_plot.png
vignettes/figure/smooth_plot.png
vignettes/figure/smoothed_plot.png
vignettes/figure/trans_plots.png
