o2mod.transphylo: Run outbreaker2 using the TransPhylo model

Description Usage Arguments Value

View source: R/main.R

Description

Run outbreaker2 using the TransPhylo model

Usage

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o2mod.transphylo(
  data,
  config = NULL,
  priors = NULL,
  likelihoods = NULL,
  moves = NULL
)

Arguments

data

a list of named items containing input data as returned by outbreaker_data, with an additional item ptree providing the phylogenetic tree

config

a set of settings as returned by create_config

priors

a set of log-prior functions as returned by custom_priors

likelihoods

a set of log-likelihood functions as returned by custom_likelihoods

moves

a set of movement functions as returned by custom_moves

Value

an outbreaker_chains object


xavierdidelot/o2mod.transphylo documentation built on Nov. 21, 2021, 3:29 a.m.