islands_2types_1000reps: 1000 islands in DAISIE format simulated with the ML...
In xieshu95/Trait_dependent_TraiSIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Description
Format
Source
See Also
Description
Each simulated dataset is an element of the list, which can be called using
e.g. islands_2types_1000reps[[1]] Each of the island replicates is a list in
itself. The first (e.g. islands_2types_1000reps[[x]][[1]]) element of that
list has the following components:
$island_age - the island age
$not_present_type1 - the number of mainland lineages of type 1
that are not present on the island
$not_present_type2 - the
number of mainland lineages of type 2 that are not present on the island
$stt_all - STT table for all species on the island (nI - number of
non-endemic species; nA - number of anagenetic species, nC - number of
cladogenetic species, present - number of independent colonisations present
)
$stt_stt_type1 - STT table for type 1 species on the island (nI
- number of non-endemic species; nA - number of anagenetic species, nC -
number of cladogenetic species, present - number of independent
colonisations present )
$stt_stt_type2 - STT table for type 2
species on the island (nI - number of non-endemic species; nA - number of
anagenetic species, nC - number of cladogenetic species, present - number of
independent colonisations present )
The subsequent elements of the list each contain information on a single
colonist lineage on the island and has 4 components:
$branching_times - island age and stem age of the population/species
in the case of Non-endemic, Non-endemic_MaxAge and Endemic anagenetic
species. For cladogenetic species these should be island age and branching
times of the radiation including the stem age of the radiation.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
$missing_species - number of island species that were not sampled for
particular clade (only applicable for endemic clades)
$type_1or2 - whether the colonist belongs to type 1 or type 2
Format
A list with 1000 items.
Source
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium
and non-equilibrium dynamics simultaneously operate in the Galapagos
islands. Ecology Letters 18: 844-852.
See Also
xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.
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Description Format Source See Also
Description
Each simulated dataset is an element of the list, which can be called using
e.g. islands_2types_1000reps[[1]] Each of the island replicates is a list in
itself. The first (e.g. islands_2types_1000reps[[x]][[1]]) element of that
list has the following components:
$island_age - the island age
$not_present_type1 - the number of mainland lineages of type 1
that are not present on the island
$not_present_type2 - the
number of mainland lineages of type 2 that are not present on the island
$stt_all - STT table for all species on the island (nI - number of
non-endemic species; nA - number of anagenetic species, nC - number of
cladogenetic species, present - number of independent colonisations present
)
$stt_stt_type1 - STT table for type 1 species on the island (nI
- number of non-endemic species; nA - number of anagenetic species, nC -
number of cladogenetic species, present - number of independent
colonisations present )
$stt_stt_type2 - STT table for type 2
species on the island (nI - number of non-endemic species; nA - number of
anagenetic species, nC - number of cladogenetic species, present - number of
independent colonisations present )
The subsequent elements of the list each contain information on a single
colonist lineage on the island and has 4 components:
$branching_times - island age and stem age of the population/species
in the case of Non-endemic, Non-endemic_MaxAge and Endemic anagenetic
species. For cladogenetic species these should be island age and branching
times of the radiation including the stem age of the radiation.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
$missing_species - number of island species that were not sampled for
particular clade (only applicable for endemic clades)
$type_1or2 - whether the colonist belongs to type 1 or type 2
Format
A list with 1000 items.
Source
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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