Files in xu-hong/rphenoscape

Semantically Rich Phenotypic Traits from the Phenoscape Knowledgebase

.Rbuildignore

.circleci/config.yml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/KBinfo.R R/dependency.R R/deprecated.R R/get_IRI.R R/is_relation.R R/mutual_exclusivity.R R/nexml.R R/ontotrace.R R/owl_obj.R R/phen_obj.R R/phenotypes.R R/pkb_get.R R/profile-semsim.R R/response.R R/semsim.R R/study.R R/term-type.R R/term-weights.R R/term_classification.R R/terms.R R/zzz.r README.md README.rmd

_pkgdown.yml

docs/404.html

docs/CNAME

docs/LICENSE-text.html

docs/articles/index.html

docs/articles/rphenoscape.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/add_provenance_record.html

docs/reference/anatomy_ontology_iris.html

docs/reference/corpus_size.html

docs/reference/find_term.html

docs/reference/get_KBinfo.html

docs/reference/get_char_matrix.html

docs/reference/get_char_matrix_meta.html

docs/reference/get_data.html

docs/reference/get_ontotrace_data.html

docs/reference/get_phenotypes-1.png

docs/reference/get_phenotypes.html

docs/reference/get_studies.html

docs/reference/get_study_data.html

docs/reference/get_term_iri.html

docs/reference/get_term_label.html

docs/reference/index.html

docs/reference/is_extinct.html

docs/reference/is_relation.html

docs/reference/mutual_exclusivity_pairwise.html

docs/reference/mutually_exclusive.html

docs/reference/nexml_drop.html

docs/reference/obo_prefix.html

docs/reference/owl.html

docs/reference/pa_dep_matrix.html

docs/reference/phenotype.html

docs/reference/phenotype_matches.html

docs/reference/pk_class.html

docs/reference/pk_get_iri.html

docs/reference/pk_get_ontotrace_xml.html

docs/reference/pk_get_study.html

docs/reference/pk_get_study_list.html

docs/reference/pk_get_study_meta.html

docs/reference/pk_get_study_xml.html

docs/reference/pk_is_descendant.html

docs/reference/pk_is_extinct.html

docs/reference/pk_ontotrace.html

docs/reference/pk_terms.html

docs/reference/pkb_args_to_query.html

docs/reference/profile_similarity.html

docs/reference/rclean_jsonld_names.html

docs/reference/resolve_label_expression.html

docs/reference/rphenoscape-deprecated.html

docs/reference/similarity-1.png

docs/reference/similarity.html

docs/reference/state_symbols2labels.html

docs/reference/subsumer_matrix.html

docs/reference/taxon_ontology_iris.html

docs/reference/term_category.html

docs/reference/term_classification.html

docs/reference/term_freqs.html

docs/reference/term_iri.html

docs/reference/terminfo.html

docs/reference/terms.html

docs/sitemap.xml

inst/examples/characters.xml

inst/examples/comp_analysis.xml

inst/examples/meta_example.xml

inst/examples/ontotrace-result.xml

inst/examples/phenoscape.xml

inst/examples/primates.xml

inst/examples/test.xml

inst/examples/test_original.xml

man/.Rapp.history

man/add_provenance_record.Rd man/anatomy_ontology_iris.Rd man/corpus_size.Rd man/find_term.Rd man/get_KBinfo.Rd man/get_char_matrix.Rd man/get_char_matrix_meta.Rd man/get_data.Rd man/get_ontotrace_data.Rd man/get_phenotypes.Rd man/get_studies.Rd man/get_study_data.Rd man/get_term_iri.Rd man/get_term_label.Rd man/is_extinct.Rd man/is_relation.Rd man/mutual_exclusivity_pairwise.Rd man/mutually_exclusive.Rd man/nexml_drop.Rd man/obo_prefix.Rd man/owl.Rd man/pa_dep_matrix.Rd man/phenotype.Rd man/phenotype_matches.Rd man/pkb_args_to_query.Rd man/profile_similarity.Rd man/rclean_jsonld_names.Rd man/resolve_label_expression.Rd man/rphenoscape-deprecated.Rd man/similarity.Rd man/state_symbols2labels.Rd man/subsumer_matrix.Rd man/taxon_ontology_iris.Rd man/term_category.Rd man/term_classification.Rd man/term_freqs.Rd man/term_iri.Rd man/terminfo.Rd man/terms.Rd tests/testthat.R

tests/testthat/.Rapp.history

tests/testthat/test-classif.R tests/testthat/test-depmatrix.R tests/testthat/test-freqs.R tests/testthat/test-get-IRI.R tests/testthat/test-kb.R tests/testthat/test-mutual-exclusivity.R tests/testthat/test-nexml.R tests/testthat/test-ontotrace.R tests/testthat/test-owl.R tests/testthat/test-phenotypes.R tests/testthat/test-pk.R tests/testthat/test-semsim.R tests/testthat/test-study.R vignettes/rphenoscape.Rmd

xu-hong/rphenoscape documentation built on Jan. 28, 2024, 12:22 p.m.