BiocycPathwayGenes: Get all genes involved in a BioCyc pathway.

Description Usage Arguments Value Examples

View source: R/biocyc.R

Description

Get all genes involved in a BioCyc pathway.

Usage

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BiocycPathwayGenes(org.id = "HUMAN", pathway)

Arguments

org.id

The identifier for the organism database in BioCyc, e.g. ECOLI, HUMAN, META, AFER243159

pathway

A case-sensitive pathway object identifier, e.g. PWY66-400, LYSINE-DEG1-PWY.

Value

If the pathway is found, returns a tibble with columns BiocycGene, BiocycProtein, Symbol and Ensembl, where BiocycGene and BiocycProtein are the gene and protein IDs in the BioCyc database, respectively. Returns NULL if the pathway ID is not found.

Examples

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BiocycPathwayGenes("HUMAN", "PWY66-400")
BiocycPathwayGenes("HUMAN", "TRYPTOPHAN-DEGRADATION-1")

y1zhou/brendaDb documentation built on Aug. 2, 2021, 12:02 a.m.