API for ymatsumoto/mlstverse
An implementation of strain level identification based on MLST (Multi-Locus Sequence Typing)

Global functions
buildProfiles Source code
calcMLSTScore Source code
createCustomRASTProfile Source code
createProfile Source code
createQuery Source code
db.buildCustomDB Source code
download.fasta Source code
extractOrthologs Source code
extractProduct Source code
extractRPs.NCBI Source code
extractRPs.RAST Source code
extractrRNA.RAST Source code
filter.j Source code Source code
getAssemblySummary Source code
getCDSFasta Source code
getCounts Source code
getGFF Source code
getGenomicFasta Source code
getRefSeqFasta Source code
getRefSeqRNA Source code
mlstDB.build Source code
mlstDB.extract Source code
mlstDB.importGFF Source code
mlstDB.resetIDs Source code
mlstDB.subset Source code
mlstDB.subsetASM Source code
mlstverse Source code
obtainConsensus Source code
readSAM Source code
tmp.func2 Source code
tmp.func3 Source code
updateGID Source code
updateGIDs Source code Source code
ymatsumoto/mlstverse documentation built on April 15, 2019, 10:46 a.m.