In zalperst/visualizeprot: Visualize the Protein Chemical Property Landscape

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)

Visualizeprot

This package is meant to be used for a quick visualization of the polar landscape across the protein coordinate

Notes

5kyo.pdb is provided for testing (a CYP protein)

Installation.

devtools::install_github("zalperst/visualizeprot")

Quick Demo

Let's see what we can do: we will get our files formatted, then check out the logP/ acidity landscape across the atomic coordinate

library(Rpdb)
library(dplyr)
library(tidyverse)
library(visualizeprot)
#CYP is a pre-loaded pdb just for testing
# to use your own pdb, use x <- Rpdb::read.pdb("/pathtopdb/xxx.pdb")
y <- pdb_dataframe(CYP)
z <- assign_params(y)
full_landscape(z)

zalperst/visualizeprot documentation built on May 4, 2019, 9:08 p.m.