Files in zarquon42b/Morpho
Calculations and Visualisations Related to Geometric Morphometrics
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Atlas.r
R/CAC.r
R/CVA.crova.r
R/CVA.r
R/CVAdists.r
R/ComputeTransform.r
R/CreateL.r
R/Morpho-package.R
R/NNshapeReg.r
R/PCdist.r
R/PCmeaning.r
R/ProcGPA.r
R/RegScore.r
R/addo.r
R/ang.r
R/angle.calc.r
R/angleTest.r
R/anonymize.r
R/applyTransform.r
R/armaGinv.r
R/asymPermu.r
R/barycenter.r
R/bindArr.r
R/cExtract.r
R/cSize.r
R/calcGamma.r
R/calcTang_U.r
R/calcTang_U_s.r
R/check.lm.r
R/checkNA.r
R/classify.r
R/closemeshKD.r
R/colors.r
R/computeArea.r
R/conv2backf.r
R/covDist.r
R/createMissingList.r
R/createVarTable.r
R/crossp.r
R/cutSpace.r
R/data2platonic.r
R/deformGrid2d.r
R/deformGrid3d.r
R/difplot.lm.r
R/difplot.lm2D.r
R/eigenPCA.r
R/equidistantCurve.r
R/exVar.r
R/fastKmeans.r
R/fiducials.r
R/file2mesh.r
R/find.outliers.r
R/fixLMmirror.r
R/fixLMtps.r
R/fx.r
R/gdif.r
R/getSides.r
R/groupPCA.r
R/groupPCAcrova.r
R/histGroup.r
R/icpmat.r
R/ignoreNA.r
R/kendalldist.r
R/line2plane.r
R/lineplot.r
R/list2array.r
R/mcNNindex.r
R/mergeMeshes.r
R/mesh2grey.r
R/mesh2obj.r
R/mesh2ply.r
R/meshDist.r
R/meshDistMatrix.r
R/meshDistZExport.r
R/meshPlaneIntersect.r
R/meshcube.r
R/meshres.r
R/mirror.r
R/name2.r
R/obj2mesh.r
R/onUnload.r
R/orp.r
R/pcAlign.r
R/pcaplot3d.r
R/permudist.r
R/permuvec.r
R/place.patch.r
R/plot.normals.r
R/pls2B.r
R/ply2mesh.r
R/points2plane.r
R/pointsOnOutline.r
R/prcompfast.r
R/predictShape.lm.r
R/proc.weight.r
R/procAOVsym.r
R/procSym.r
R/projRead.r
R/qqmat.r
R/quad2trimesh.r
R/r2morphoj.r
R/r2morphologika.r
R/ray2mesh.r
R/read.csv.folder.r
R/read.lmdta.r
R/read.mpp.r
R/read.obj.r
R/read.pts.r
R/readLandmarks.csv.r
R/readallTPS.r
R/regdist.raw.r
R/relax.lm.r
R/relwarps.r
R/restoreShapes.r
R/retrodeform.r
R/rot.proc.r
R/rotaxis.r
R/rotmesh.onto.r
R/rotonmat.r
R/rotonto.r
R/scalemesh.r
R/scaleproc.r
R/slider2d.r
R/slider3d.r
R/solutionSpace.r
R/symmetrize.r
R/tanplan.r
R/tps3d.r
R/typprob.r
R/updateIndices.r
R/updateNormals.r
R/vecx.r
R/vertex.r
R/virtualMeshScan.r
R/warpmovie.matrix.r
R/warpmovie.r
R/write.obj.r
R/write.pts.r
README.md
data/boneData.rda
data/nose.rda
inst/CITATION
inst/COPYRIGHTS
inst/NEWS.Rd
inst/extdata/SCP1.ply
inst/extdata/SCP1_Endo.fcsv
inst/extdata/landmarks.pts
man/CAC.Rd
man/CVA.Rd
man/CreateL.Rd
man/LPS2RAS.Rd
man/Morpho-deprecated.Rd
man/Morpho-package.Rd
man/NNshapeReg.Rd
man/PCdist.Rd
man/ProcGPA.Rd
man/RegScore.Rd
man/align2procSym.Rd
man/angle.calc.Rd
man/angleTest.Rd
man/anonymize.Rd
man/applyTransform.Rd
man/areaSphere.Rd
man/areaSpherePart.Rd
man/armaGinv.Rd
man/arrMean3.Rd
man/array2list.Rd
man/asymPermute.Rd
man/barycenter.Rd
man/bindArr.Rd
man/boneData.Rd
man/cExtract.Rd
man/cSize.Rd
man/checkLM.Rd
man/checkNA.Rd
man/classify.Rd
man/closemeshKD.Rd
man/colors.Rd
man/computeArea.Rd
man/computeTransform.Rd
man/covDist.Rd
man/covW.Rd
man/createAtlas.Rd
man/createMissingList.Rd
man/cutMeshPlane.Rd
man/cutSpace.Rd
man/data2platonic.Rd
man/deformGrid2d.Rd
man/deformGrid3d.Rd
man/equidistantCurve.Rd
man/exVar.Rd
man/fastKmeans.Rd
man/find.outliers.Rd
man/fixLMmirror.Rd
man/fixLMtps.Rd
man/getFaces.Rd
man/getMeaningfulPCs.Rd
man/getOuterViewpoints.Rd
man/getPCscores.Rd
man/getPCtol.Rd
man/getPLSCommonShape.Rd
man/getPLSfromScores.Rd
man/getPLSscores.Rd
man/getPointAlongOutline.Rd
man/getSides.Rd
man/getTrafo4x4.Rd
man/getTrafoRotaxis.Rd
man/getVisibleVertices.Rd
man/groupPCA.Rd
man/histGroup.Rd
man/icpmat.Rd
man/invertFaces.Rd
man/kendalldist.Rd
man/line2plane.Rd
man/lineplot.Rd
man/list2array.Rd
man/mcNNindex.Rd
man/mergeMeshes.Rd
man/mesh2grey.Rd
man/mesh2ply.Rd
man/meshDist.Rd
man/meshPlaneIntersect.Rd
man/meshcube.Rd
man/meshres.Rd
man/mirror.Rd
man/mirror2plane.Rd
man/name2factor.Rd
man/nose.Rd
man/pcAlign.Rd
man/pcaplot3d.Rd
man/permudist.Rd
man/permuvec.Rd
man/placePatch.Rd
man/plot.slider3d.Rd
man/plotAtlas.Rd
man/plotNormals.Rd
man/pls2B.Rd
man/plsCoVar.Rd
man/plsCoVarCommonShape.Rd
man/ply2mesh.Rd
man/points2plane.Rd
man/prcompfast.Rd
man/predict.CVA.Rd
man/predict.bgPCA.Rd
man/predictPLSfromData.Rd
man/predictPLSfromScores.Rd
man/predictRelWarps.Rd
man/predictShape.lm.Rd
man/proc.weight.Rd
man/procAOVsym.Rd
man/procSym.Rd
man/projRead.Rd
man/qqmat.Rd
man/quad2trimesh.Rd
man/r2morphoj.Rd
man/ray2mesh.Rd
man/read.csv.folder.Rd
man/read.fcsv.Rd
man/read.lmdta.Rd
man/read.mpp.Rd
man/read.pts.Rd
man/read.slicerjson.Rd
man/readLandmarks.csv.Rd
man/readallTPS.Rd
man/regdist.Rd
man/relWarps.Rd
man/relaxLM.Rd
man/render.Rd
man/resampleCurve.Rd
man/restoreFromPCA.Rd
man/restoreShapes.Rd
man/retroDeform3d.Rd
man/retroDeformMesh.Rd
man/rotaxis3d.Rd
man/rotaxisMat.Rd
man/rotmesh.onto.Rd
man/rotonmat.Rd
man/rotonto.Rd
man/scalemesh.Rd
man/slider2d.Rd
man/slider3d.Rd
man/solutionSpace.Rd
man/sortCurve.Rd
man/symmetrize.Rd
man/tangentPlane.Rd
man/tps3d.Rd
man/typprob.Rd
man/updateIndices.Rd
man/updateNormals.Rd
man/vecx.Rd
man/vertex.Rd
man/virtualMeshScan.Rd
man/warpmovie3d.Rd
man/write.fcsv.Rd
man/write.pts.Rd
man/write.slicerjson.Rd
src/CVAdists.cpp
src/CVAdists.h
src/CubeStuff.cpp
src/CubeStuff.h
src/Makevars
src/addCube.h
src/ang_calc.cpp
src/armaGinvCpp.cpp
src/armaGinvCpp.h
src/asymPerm.cpp
src/asymPerm.h
src/barycenter.cpp
src/covPCA.cpp
src/covPCA.h
src/createL.cpp
src/doozers.cpp
src/doozers.h
src/edgePlane.cpp
src/face_zero.cpp
src/fastSubsetMeans.cpp
src/init.c
src/meshres.cpp
src/permudistArma.cpp
src/permudistArma.h
src/points2mesh.cpp
src/points2mesh.h
src/tpsfx.cpp
src/tweakU.cpp
src/updateNormals.cpp
src/updateNormals.h
tests/testthat.R
tests/testthat/test-CVA.r
tests/testthat/test-mirror.r
tests/testthat/test-pls2B.r
tests/testthat/test-relWarps.r
tests/testthat/test-slider3d.r
tests/testthat/testdata/CVA.rds
tests/testthat/testdata/pls-baseline.rds
tests/testthat/testdata/rW.rds
tests/testthat/testdata/slider3d.rds
