zdk123/SpiecEasi
Sparse Inverse Covariance for Ecological Statistical Inference

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Vignettes
Functions
183
Source code
21
Man pages
45
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zdk123/SpiecEasi: Sparse Inverse Covariance for Ecological Statistical Inference
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API

API for zdk123/SpiecEasi
Sparse Inverse Covariance for Ecological Statistical Inference

Global functions
.binSearchCond Source code
.check_pulsar_params Source code
.data.checks Source code
.fixInf Source code
.getThetaMat Source code
.negbin_getK Source code
.phy2mat Source code
.sparseThresh Source code
.spiec.easi.norm Source code
.zinegbin_getK Source code
.zinegbin_getLam Source code
.zinegbin_getP Source code
.zipois_getLam Source code
.zipois_getP Source code
ADMM Source code
AGP Man page
C_from_V Source code
SpiecEasi Man page
SpiecEasi-package Man page
adaptive.thresh Source code
adj2igraph Man page Source code
admm2 Source code
alr Man page Source code
alr.data.frame Man page Source code
alr.default Man page Source code
alr.matrix Man page Source code
amgut1.filt Man page
amgut2.filt.phy Man page
as.data.frame.graph Man page Source code
as.matrix.graph Man page Source code
av Source code
band Source code
basis_cov Source code
basis_var Source code
block Source code
clr Man page Source code
clr.data.frame Man page Source code
clr.default Man page Source code
clr.matrix Man page Source code
cluster Source code
coat Man page Source code
cor2cov Man page Source code
cov2prec Man page Source code
covReport Source code
dclr Source code
dclrNPN Source code
ebic Man page Source code
edge.diss Man page Source code
edge_count Source code
eigGraph Source code
enforceE Source code
erdos_renyi Source code
exclude_pairs Source code
fitdistr Man page
getOptBeta Man page Source code
getOptCov Man page Source code
getOptInd Man page Source code
getOptLambda Man page Source code
getOptMerge Man page Source code
getOptNet Man page Source code
getOptX Source code
getOptX.pulsar.refit Source code
getOptiCov Man page Source code
getRefit Man page Source code
getStability Man page Source code
get_comm_params Man page Source code
glm.neighborhood Source code
graph2prec Man page Source code
graphReport Source code
hard.thresh Source code
hmp2 Man page
hmp216S Man page
hmp2prot Man page
hub Source code
logLiknb Source code
logLikzinb Source code
logLikzip Source code
make_graph Man page Source code
merge2path Source code
multi.spiec.easi Man page Source code
neff Man page Source code
neighborhood.net Man page Source code
norm_diric Source code
norm_pseudo Man page Source code
norm_rdiric Man page Source code
norm_to_total Man page Source code
prec2cov Man page Source code
pulsar.params Man page
pval.sparccboot Man page Source code
qqdplot Source code
qqdplot_comm Man page Source code
rmvnegbin Man page Source code
rmvnorm Man page Source code
rmvpois Man page Source code
rmvzinegbin Man page Source code
rmvzipois Man page Source code
robustPCA Man page Source code
rzipois Man page Source code
scale_free Source code
shannon Man page Source code
soft.thresh Source code
spMat2Adj Source code
sparcc Man page Source code
sparccboot Man page Source code
sparccinner Source code
sparseLowRankiCov Man page Source code
sparseiCov Man page Source code
spiec.easi Man page Source code
spiec.easi.default Man page Source code
spiec.easi.list Man page Source code
spiec.easi.otu_table Man page Source code
spiec.easi.phyloseq Man page Source code
stars.pr Man page Source code
stars.roc Man page Source code
symBeta Man page Source code
synth_comm_from_counts Man page Source code
tril Man page Source code Source code
triu Man page Source code Source code
triu2diag Man page Source code Source code
zdk123/SpiecEasi documentation built on Oct. 20, 2023, 6:49 a.m.

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