API for zhushijia/SMRTER
Single Molecule Real Time sequencing Epigenetic Refinement

Global functions
EMM Source code
GMM Source code
GMM2 Man page Source code
IpdRatioPositionSyntheticControl_SM Source code
IpdRatioPositionTraditionalControl_SM Source code
IpdRatioSyntheticControl_Aggregate Source code
IpdRatioSyntheticControl_Aggregate2 Source code
IpdRatioSyntheticControl_SM Source code
IpdRatioTraditionalControl_Aggregate Source code
IpdRatioTraditionalControl_SM Source code
MultiPositionSyntheticControl Source code
MultiPositionTraditionalControl Source code
PositionIpdRatioSyntheticControl_Aggregate Source code
PositionIpdRatioTraditionalControl_Aggregate Source code
callFDR Man page Source code
callFDR_eachMotif Man page Source code
callMotif Man page Source code
cappingSyntheticControl Source code
cappingTraditionalControl Source code
computeObservationTstatistic Source code
computePositionSyntheticControl Source code
computePositionTraditionalControl Source code
drawMotifHeatmap Man page Source code
enumerateMotif Man page Source code
fetchChunks Source code
fetchChunks2 Source code
getConsensus Man page Source code
getGlobalPercentile Source code
getSmrtOfMotif Man page Source code
getSmrtOfMotif2 Source code
hemiMethylation Man page Source code
identificationQv Source code
loadCmpH5 Man page Source code
overlapWithBed Man page Source code
readSmrtCsv Man page Source code
readSmrtGff Man page Source code
smrterSyntheticControl Man page Source code
smrterTraditionalControl Man page Source code
splitSmrt Man page Source code
subreadNormalizationFactor Source code
testProcedure Source code
zhushijia/SMRTER documentation built on Feb. 19, 2018, 11:19 p.m.