Man pages for zwdzwd/sesameData
Supporting Data for SeSAMe Package
| build_GENCODE_gtf | build GENCODE gtf |
| df_master | Master data frame for all object to cache |
| extend | Extend a GRanges |
| inferPlatformFromProbeIDs | infer platform from Probe_IDs |
| sesameData_annoProbes | Annotate Probes by Probe ID |
| sesameDataCache | Cache SeSAMe data |
| sesameDataCacheAll | Cache all SeSAMe data |
| sesameData_check_genome | Find genome assembly version(s) supported for a platform |
| sesameData_check_platform | Check platform code |
| sesameDataGet | Get SeSAMe data |
| sesameDataGet_checkEnv | Check whether the title exists in cacheEnv |
| sesameData_getGenomeInfo | Get genome info files |
| sesameData_getManifestGRanges | get Infinium manifest GRanges |
| sesameData_getProbesByGene | Get Probes by Genes or Gene Promoters |
| sesameData_getProbesByRegion | Get probes by genomic region |
| sesameDataGet_resetEnv | Empty cache environment to free memory |
| sesameData_getTxnGRanges | convert GRangesList to transcript GRanges |
| sesameDataHas | Whether sesameData has |
| sesameDataList | List all SeSAMe data |
| sesameData_txnToGeneGRanges | convert transcript GRanges to gene GRanges |
