currentGenomeVersion: Current genome version

In acidgenomics/AcidGenomes: Acid Genomics Genome Annotations

Current genome version

Description

Obtain the latest release version from various genome annotation sources.

Usage

currentEnsemblVersion()

currentGencodeVersion(organism = c("Homo sapiens", "Mus musculus"))

currentRefseqVersion()

currentFlybaseVersion(dmel = FALSE)

currentWormbaseVersion()

Arguments

organism	character(1). Full Latin organism name (e.g. "Homo sapiens").
dmel	logical(1). Return Drosophila melanogaster genome release version.

Value

character(1) or integer(1) when possible. Release version.

Note

Updated 2023-10-04.

See Also

Refer to the koopa package for Bash shell variants.

Examples

## Ensembl.
try({
    currentEnsemblVersion()
})

## GENCODE.
try({
    currentGencodeVersion(organism = "Homo sapiens")
})

## RefSeq.
try({
    currentRefseqVersion()
})

## WormBase.
try({
    currentWormbaseVersion()
})

acidgenomics/AcidGenomes documentation built on Dec. 10, 2023, 10:35 p.m.