ibd_phylo: IBD data.
In corncob: Count Regression for Correlated Observations with the Beta-Binomial
ibd_phylo R Documentation
IBD data.
Description
A phyloseq object with an OTU table and sample data from an IBD microbiome study.
Usage
ibd_phylo
Format
A phyloseq-class experiment-level object with an OTU table and sample data.
References
Papa, E., Docktor, M., Smillie, C., Weber, S., Preheim, S. P., Gevers, D., Giannoukos, G., Ciulla, D., Tabbaa, D., Ingram, J., Schauer, D. B., Ward, D. V., Korzenik, J. R., Xavier, R. J., Bousvaros, A., Alm, E. J. & Schauer, D. B. (2012). Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PloS One, 7(6), e39242. <doi.org/10.1371/journal.pone.0039242>.
Duvallet, C., Gibbons, S., Gurry, T., Irizarry, R., & Alm, E. (2017). MicrobiomeHD: the human gut microbiome in health and disease [Data set]. Zenodo. <doi.org/10.5281/zenodo.1146764>.
corncob documentation built on Aug. 31, 2023, 9:06 a.m.
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| ibd_phylo | R Documentation |
IBD data.
Description
A phyloseq object with an OTU table and sample data from an IBD microbiome study.
Usage
ibd_phylo
Format
A phyloseq-class experiment-level object with an OTU table and sample data.
References
Papa, E., Docktor, M., Smillie, C., Weber, S., Preheim, S. P., Gevers, D., Giannoukos, G., Ciulla, D., Tabbaa, D., Ingram, J., Schauer, D. B., Ward, D. V., Korzenik, J. R., Xavier, R. J., Bousvaros, A., Alm, E. J. & Schauer, D. B. (2012). Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PloS One, 7(6), e39242. <doi.org/10.1371/journal.pone.0039242>.
Duvallet, C., Gibbons, S., Gurry, T., Irizarry, R., & Alm, E. (2017). MicrobiomeHD: the human gut microbiome in health and disease [Data set]. Zenodo. <doi.org/10.5281/zenodo.1146764>.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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