init: Methods for working with the model compartment list

In mrgsolve: Simulate from ODE-Based Models

Methods for working with the model compartment list

Description

Calling init with the model object as the first argument will return the model initial conditions as a numericlist object. See numericlist for methods to deal with cmt_list objects.

Usage

init(.x, ...)

## S4 method for signature 'mrgmod'
init(.x, .y = list(), ..., .pat = "*")

## S4 method for signature 'mrgsims'
init(.x, ...)

## S4 method for signature 'missing'
init(.x, ...)

## S4 method for signature 'list'
init(.x, ...)

## S4 method for signature 'ANY'
init(.x, ...)

Arguments

.x	the model object
...	passed along
.y	list to be merged into parameter list
.pat	a regular expression (character) to be applied as a filter when printing compartments to the screen

Details

Can be used to either get a compartment list object from a mrgmod model object or to update the compartment initial conditions in a model object. For both uses, the return value is a cmt_list object. For the former use, init is usually called to print the compartment initial conditions to the screen, but the cmt_list object can also be coerced to a list or numeric R object.

Value

an object of class cmt_list (see numericlist)

Examples

## example("init")
mod <- mrgsolve::house()

init(mod)
init(mod, .pat="^C") ## may be useful for large models

class(init(mod))

init(mod)$CENT

as.list(init(mod))
as.data.frame(init(mod))

mrgsolve documentation built on Aug. 16, 2023, 5:07 p.m.