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inst/auxiliary/makeChlens.R
In CloneSeeker: Seeking and Finding Clones in Copy Number and Sequencing Data
chdata <- read.table("chlens.txt", sep="\t") # chromnumber, length
chnames <- paste("chr", c(1:22, "X", "Y"), sep="")
chdata$Chrom <- factor(chnames[chdata$V1], levels = chnames)
chlens <- as.vector(tapply(chdata$V2, list(chdata$Chrom), max))
names(chlens) <- chnames
save(chlens, file = "../../Data/sysdata.rda")
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CloneSeeker documentation built on July 1, 2022, 3 a.m.
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chdata <- read.table("chlens.txt", sep="\t") # chromnumber, length
chnames <- paste("chr", c(1:22, "X", "Y"), sep="")
chdata$Chrom <- factor(chnames[chdata$V1], levels = chnames)
chlens <- as.vector(tapply(chdata$V2, list(chdata$Chrom), max))
names(chlens) <- chnames
save(chlens, file = "../../Data/sysdata.rda")
Try the CloneSeeker package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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