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inst/doc/SpliceIndex.R
In GDS: Genome-Wide Differential Splicing Detection
library(GDS)
load("TissueData/TissueData_ExonLevelSummarized.RData")
load("TissueData/TissueData_GeneLevelSummarized.RData")
groupHMPT=c(7,8,9,16,17,18,22,23,24,31,32,33)
groupOthers=c(1,2,3,4,5,6,10,11,12,13,14,15,19,20,21,25,26,27,28,29,30)
groups=list(group1=groupHMPT,group2=groupOthers)
SI_Output=SpliceIndex(GeneData=TissueData_ExonLevelSummarized,ExonData=TissueData_GeneLevelSummarized,InformativeExons=NULL,groups=groups,paired=FALSE,significancelevel=NULL)
save(SI_Output,file="TissueData/SI_Output.RData")
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GDS documentation built on May 2, 2019, 6:09 p.m.
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library(GDS)
load("TissueData/TissueData_ExonLevelSummarized.RData")
load("TissueData/TissueData_GeneLevelSummarized.RData")
groupHMPT=c(7,8,9,16,17,18,22,23,24,31,32,33)
groupOthers=c(1,2,3,4,5,6,10,11,12,13,14,15,19,20,21,25,26,27,28,29,30)
groups=list(group1=groupHMPT,group2=groupOthers)
SI_Output=SpliceIndex(GeneData=TissueData_ExonLevelSummarized,ExonData=TissueData_GeneLevelSummarized,InformativeExons=NULL,groups=groups,paired=FALSE,significancelevel=NULL)
save(SI_Output,file="TissueData/SI_Output.RData")
Try the GDS package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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