inst/tests/runit.operators.R

In SoilR: Models of Soil Organic Matter Decomposition

test.ModelOperators=function(){
      t_start=0 
      t_end=10 
      tn=50
      timestep=(t_end-t_start)/tn 
      t=seq(t_start,t_end,timestep) 

      Ex=TwopParallelModel(t,ks=c(k1=0.5,k2=0.2),C0=c(c10=100, c20=150),In=10,gam=0.7,xi=0.5)
      Ct=getC(Ex)

      plot(t,rowSums(Ct),type="l",lwd=2,
           ylab="Carbon stocks (arbitrary units)",xlab="Time",ylim=c(0,sum(Ct[1,]))) 
      lines(t,Ct[,1],col=2)
      lines(t,Ct[,2],col=4)
      legend("topright",c("Total C","C in pool 1", "C in pool 2"),
             lty=c(1,1,1),col=c(1,2,4),lwd=c(2,1,1),bty="n")
      
      Rt=getReleaseFlux(Ex)
      plot(t,rowSums(Rt),type="l",ylab="Carbon released (arbitrary units)",
           xlab="Time",lwd=2,ylim=c(0,sum(Rt[1,]))) 
      lines(t,Rt[,1],col=2)
      lines(t,Rt[,2],col=4) 
      legend("topleft",c("Total C release","C release from pool 1", "C release from pool 2"),
             lty=c(1,1,1),col=c(1,2,4),lwd=c(2,1,1),bty="n")
      # different use cases of the operaotor and other Model classes should go here
      #Ct=Ex[
}