Nothing
misc/carex.R
In maticce: Mapping Transitions in Continuous Character Evolution
carex <- structure(list(tree = structure(list(edge = structure(c(54L,
55L, 55L, 56L, 56L, 54L, 57L, 58L, 58L, 59L, 59L, 57L, 60L, 61L,
62L, 63L, 63L, 64L, 64L, 62L, 61L, 65L, 65L, 60L, 66L, 67L, 67L,
66L, 68L, 68L, 69L, 70L, 71L, 72L, 73L, 73L, 74L, 75L, 75L, 74L,
76L, 76L, 77L, 77L, 72L, 78L, 79L, 79L, 80L, 80L, 81L, 81L, 82L,
82L, 83L, 83L, 78L, 84L, 85L, 86L, 86L, 85L, 87L, 88L, 88L, 89L,
90L, 90L, 89L, 91L, 91L, 87L, 92L, 92L, 93L, 93L, 84L, 94L, 94L,
71L, 95L, 95L, 70L, 96L, 97L, 98L, 98L, 97L, 99L, 99L, 100L,
101L, 101L, 100L, 102L, 102L, 96L, 103L, 103L, 104L, 104L, 69L,
105L, 105L, 55L, 1L, 56L, 2L, 3L, 57L, 58L, 4L, 59L, 5L, 6L,
60L, 61L, 62L, 63L, 7L, 64L, 8L, 9L, 10L, 65L, 11L, 12L, 66L,
67L, 13L, 14L, 68L, 15L, 69L, 70L, 71L, 72L, 73L, 16L, 74L, 75L,
17L, 18L, 76L, 19L, 77L, 20L, 21L, 78L, 79L, 22L, 80L, 23L, 81L,
24L, 82L, 25L, 83L, 26L, 27L, 84L, 85L, 86L, 28L, 29L, 87L, 88L,
30L, 89L, 90L, 31L, 32L, 91L, 33L, 34L, 92L, 35L, 93L, 36L, 37L,
94L, 38L, 39L, 95L, 40L, 41L, 96L, 97L, 98L, 42L, 43L, 99L, 44L,
100L, 101L, 45L, 46L, 102L, 47L, 48L, 103L, 49L, 104L, 50L, 51L,
105L, 52L, 53L), .Dim = c(104L, 2L)), edge.length = c(0.131608041,
0.868391959, 0.4774298606, 0.3909620984, 0.3909620984, 0.0376523746,
0.0915148608, 0.8708327646, 0.228673604, 0.6421591606, 0.6421591606,
0.03047094, 0.197188661, 0.3667080933, 0.1187924864, 0.2491874447,
0.0680851795, 0.1811022651, 0.1811022651, 0.3679799311, 0.2879776585,
0.4467103659, 0.4467103659, 0.0760667065, 0.2546030817, 0.6012068973,
0.6012068973, 0.0734898564, 0.7823201225, 0.0354531643, 0.0805067273,
0.1044180282, 0.1470105274, 0.0657037966, 0.3492278788, 0.119097461,
0.0354160188, 0.194714399, 0.194714399, 0.0351340264, 0.1949963914,
0.0734473345, 0.1215490569, 0.1215490569, 0.0370307146, 0.0478702765,
0.3300306842, 0.1023596238, 0.2276710604, 0.0531080597, 0.1745630008,
0.0755096136, 0.0990533872, 0.0744081089, 0.0246452783, 0.0246452783,
0.0339921757, 0.0610205014, 0.1472200431, 0.1356682405, 0.1356682405,
0.055626089, 0.053885115, 0.1733770795, 0.0401682819, 0.0513531937,
0.0818556039, 0.0818556039, 0.0352913046, 0.0979174931, 0.0979174931,
0.0400989858, 0.1871632087, 0.0547825691, 0.1323806396, 0.1323806396,
0.0591487349, 0.2847600501, 0.2847600501, 0.0421214255, 0.5198207772,
0.5198207772, 0.0696998161, 0.2044319398, 0.1668478906, 0.2253805845,
0.2253805845, 0.0732033467, 0.3190251283, 0.1229909423, 0.1015139286,
0.0945202574, 0.0945202574, 0.034953098, 0.161081088, 0.161081088,
0.1165220723, 0.4801383425, 0.3700801096, 0.1100582329, 0.1100582329,
0.0946612554, 0.6522057028, 0.6522057028), Nnode = 52L, tip.label = c("argyrantha",
"preslii", "phaeocephala", "bohemica", "foenea", "praticola",
"ebenea", "haydeniana", "microptera", "peucophila", "integra",
"subfusca", "macloviana", "pachystachya", "adusta", "cumulata",
"hyalina", "brevior", "reniformis", "molestiformis", "shinnersii",
"opaca", "crawfordii", "bebbii", "cristatella", "projecta", "tribuloidesVtribuloides",
"buffaloriver", "teneraVechinodes", "missouriensis", "teneraVtenera",
"tincta", "festucacea", "oronensis", "muskingumensis", "bicknellii",
"merrittfernaldii", "molesta", "normalis", "ovalis3098", "feta",
"longii", "vexans", "alata", "scopariaVscoparia", "scopariaVtessellata",
"albolutescens", "suberecta", "ozarkana", "hormathodes", "straminea",
"xerantica", "athrostachya")), .Names = c("edge", "edge.length",
"Nnode", "tip.label"), class = "phylo", origin = "bayes.tre"),
dat = structure(c(4.382026635, 4.369447852, 4.430816799,
4.382026635, 4.414856779, 4.336767728, 4.430816799, 4.406719247,
4.384274107, 4.304065093, 4.406719247, 4.430816799, 4.454347296,
4.363862664, 4.356708827, 4.048824047, 4.304065093, 4.085976313,
4.382026635, 4.272630208, 4.099829492, 4.201703081, 4.222151267,
4.229312423, 4.248495242, 4.158883083, 4.25561271, 4.248495242,
4.335982696, 3.947003974, 3.999117712, 4.317488114, 4.243769809,
4.304065093, 4.382026635, 4.33073334, 4.276666119, 4.227855121,
4.236133434, 4.175770928, 4.189654742, 4.107589789, 4.237723145,
4.304065093, 4.159976236, 4.219507705, 4.189654742, 4.276666119,
4.077537444, 4.304065093, 4.304065093, 4.219507705, 4.219507705
), .Names = c("argyrantha", "preslii", "phaeocephala", "bohemica",
"foenea", "praticola", "ebenea", "haydeniana", "microptera",
"peucophila", "integra", "subfusca", "macloviana", "pachystachya",
"adusta", "cumulata", "hyalina", "brevior", "reniformis",
"molestiformis", "shinnersii", "opaca", "crawfordii", "bebbii",
"cristatella", "projecta", "tribuloidesVtribuloides", "buffaloriver",
"teneraVechinodes", "missouriensis", "teneraVtenera", "tincta",
"festucacea", "oronensis", "muskingumensis", "bicknellii",
"merrittfernaldii", "molesta", "normalis", "ovalis3098",
"feta", "longii", "vexans", "alata", "scopariaVscoparia",
"scopariaVtessellata", "albolutescens", "suberecta", "ozarkana",
"hormathodes", "straminea", "xerantica", "athrostachya")),
nodes = list(c("alata", "albolutescens", "bebbii", "bicknellii",
"brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata",
"festucacea", "feta", "hormathodes", "hyalina", "longii",
"merrittfernaldii", "missouriensis", "molesta", "molestiformis",
"muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098",
"ozarkana", "projecta", "reniformis", "scopariaVscoparia",
"scopariaVtessellata", "shinnersii", "straminea", "suberecta",
"teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides",
"vexans", "adusta", "athrostachya", "pachystachya", "xerantica",
"macloviana"), c("alata", "albolutescens", "bebbii", "bicknellii",
"brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata",
"festucacea", "feta", "hormathodes", "hyalina", "longii",
"merrittfernaldii", "missouriensis", "molesta", "molestiformis",
"muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098",
"ozarkana", "projecta", "reniformis", "scopariaVscoparia",
"scopariaVtessellata", "shinnersii", "straminea", "suberecta",
"teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides",
"vexans"), c("bebbii", "bicknellii", "brevior", "buffaloriver",
"crawfordii", "cristatella", "cumulata", "festucacea", "hyalina",
"merrittfernaldii", "missouriensis", "molesta", "molestiformis",
"muskingumensis", "normalis", "opaca", "oronensis", "projecta",
"reniformis", "shinnersii", "teneraVechinodes", "teneraVtenera",
"tincta", "tribuloidesVtribuloides", "feta", "ovalis3098"
), c("bebbii", "bicknellii", "brevior", "buffaloriver", "crawfordii",
"cristatella", "cumulata", "festucacea", "hyalina", "merrittfernaldii",
"missouriensis", "molesta", "molestiformis", "muskingumensis",
"normalis", "opaca", "oronensis", "projecta", "reniformis",
"shinnersii", "teneraVechinodes", "teneraVtenera", "tincta",
"tribuloidesVtribuloides"), c("brevior", "hyalina", "molestiformis",
"reniformis", "shinnersii"), c("suberecta", "albolutescens",
"scopariaVscoparia", "scopariaVtessellata", "alata", "vexans",
"longii"), c("subfusca", "integra", "peucophila", "microptera",
"haydeniana", "ebenea"), c("phaeocephala", "preslii", "argyrantha"
))), .Names = c("ovales.tree", "ovales.data", "ovales.nodes"))
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maticce documentation built on May 2, 2019, 6:13 p.m.
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carex <- structure(list(tree = structure(list(edge = structure(c(54L,
55L, 55L, 56L, 56L, 54L, 57L, 58L, 58L, 59L, 59L, 57L, 60L, 61L,
62L, 63L, 63L, 64L, 64L, 62L, 61L, 65L, 65L, 60L, 66L, 67L, 67L,
66L, 68L, 68L, 69L, 70L, 71L, 72L, 73L, 73L, 74L, 75L, 75L, 74L,
76L, 76L, 77L, 77L, 72L, 78L, 79L, 79L, 80L, 80L, 81L, 81L, 82L,
82L, 83L, 83L, 78L, 84L, 85L, 86L, 86L, 85L, 87L, 88L, 88L, 89L,
90L, 90L, 89L, 91L, 91L, 87L, 92L, 92L, 93L, 93L, 84L, 94L, 94L,
71L, 95L, 95L, 70L, 96L, 97L, 98L, 98L, 97L, 99L, 99L, 100L,
101L, 101L, 100L, 102L, 102L, 96L, 103L, 103L, 104L, 104L, 69L,
105L, 105L, 55L, 1L, 56L, 2L, 3L, 57L, 58L, 4L, 59L, 5L, 6L,
60L, 61L, 62L, 63L, 7L, 64L, 8L, 9L, 10L, 65L, 11L, 12L, 66L,
67L, 13L, 14L, 68L, 15L, 69L, 70L, 71L, 72L, 73L, 16L, 74L, 75L,
17L, 18L, 76L, 19L, 77L, 20L, 21L, 78L, 79L, 22L, 80L, 23L, 81L,
24L, 82L, 25L, 83L, 26L, 27L, 84L, 85L, 86L, 28L, 29L, 87L, 88L,
30L, 89L, 90L, 31L, 32L, 91L, 33L, 34L, 92L, 35L, 93L, 36L, 37L,
94L, 38L, 39L, 95L, 40L, 41L, 96L, 97L, 98L, 42L, 43L, 99L, 44L,
100L, 101L, 45L, 46L, 102L, 47L, 48L, 103L, 49L, 104L, 50L, 51L,
105L, 52L, 53L), .Dim = c(104L, 2L)), edge.length = c(0.131608041,
0.868391959, 0.4774298606, 0.3909620984, 0.3909620984, 0.0376523746,
0.0915148608, 0.8708327646, 0.228673604, 0.6421591606, 0.6421591606,
0.03047094, 0.197188661, 0.3667080933, 0.1187924864, 0.2491874447,
0.0680851795, 0.1811022651, 0.1811022651, 0.3679799311, 0.2879776585,
0.4467103659, 0.4467103659, 0.0760667065, 0.2546030817, 0.6012068973,
0.6012068973, 0.0734898564, 0.7823201225, 0.0354531643, 0.0805067273,
0.1044180282, 0.1470105274, 0.0657037966, 0.3492278788, 0.119097461,
0.0354160188, 0.194714399, 0.194714399, 0.0351340264, 0.1949963914,
0.0734473345, 0.1215490569, 0.1215490569, 0.0370307146, 0.0478702765,
0.3300306842, 0.1023596238, 0.2276710604, 0.0531080597, 0.1745630008,
0.0755096136, 0.0990533872, 0.0744081089, 0.0246452783, 0.0246452783,
0.0339921757, 0.0610205014, 0.1472200431, 0.1356682405, 0.1356682405,
0.055626089, 0.053885115, 0.1733770795, 0.0401682819, 0.0513531937,
0.0818556039, 0.0818556039, 0.0352913046, 0.0979174931, 0.0979174931,
0.0400989858, 0.1871632087, 0.0547825691, 0.1323806396, 0.1323806396,
0.0591487349, 0.2847600501, 0.2847600501, 0.0421214255, 0.5198207772,
0.5198207772, 0.0696998161, 0.2044319398, 0.1668478906, 0.2253805845,
0.2253805845, 0.0732033467, 0.3190251283, 0.1229909423, 0.1015139286,
0.0945202574, 0.0945202574, 0.034953098, 0.161081088, 0.161081088,
0.1165220723, 0.4801383425, 0.3700801096, 0.1100582329, 0.1100582329,
0.0946612554, 0.6522057028, 0.6522057028), Nnode = 52L, tip.label = c("argyrantha",
"preslii", "phaeocephala", "bohemica", "foenea", "praticola",
"ebenea", "haydeniana", "microptera", "peucophila", "integra",
"subfusca", "macloviana", "pachystachya", "adusta", "cumulata",
"hyalina", "brevior", "reniformis", "molestiformis", "shinnersii",
"opaca", "crawfordii", "bebbii", "cristatella", "projecta", "tribuloidesVtribuloides",
"buffaloriver", "teneraVechinodes", "missouriensis", "teneraVtenera",
"tincta", "festucacea", "oronensis", "muskingumensis", "bicknellii",
"merrittfernaldii", "molesta", "normalis", "ovalis3098", "feta",
"longii", "vexans", "alata", "scopariaVscoparia", "scopariaVtessellata",
"albolutescens", "suberecta", "ozarkana", "hormathodes", "straminea",
"xerantica", "athrostachya")), .Names = c("edge", "edge.length",
"Nnode", "tip.label"), class = "phylo", origin = "bayes.tre"),
dat = structure(c(4.382026635, 4.369447852, 4.430816799,
4.382026635, 4.414856779, 4.336767728, 4.430816799, 4.406719247,
4.384274107, 4.304065093, 4.406719247, 4.430816799, 4.454347296,
4.363862664, 4.356708827, 4.048824047, 4.304065093, 4.085976313,
4.382026635, 4.272630208, 4.099829492, 4.201703081, 4.222151267,
4.229312423, 4.248495242, 4.158883083, 4.25561271, 4.248495242,
4.335982696, 3.947003974, 3.999117712, 4.317488114, 4.243769809,
4.304065093, 4.382026635, 4.33073334, 4.276666119, 4.227855121,
4.236133434, 4.175770928, 4.189654742, 4.107589789, 4.237723145,
4.304065093, 4.159976236, 4.219507705, 4.189654742, 4.276666119,
4.077537444, 4.304065093, 4.304065093, 4.219507705, 4.219507705
), .Names = c("argyrantha", "preslii", "phaeocephala", "bohemica",
"foenea", "praticola", "ebenea", "haydeniana", "microptera",
"peucophila", "integra", "subfusca", "macloviana", "pachystachya",
"adusta", "cumulata", "hyalina", "brevior", "reniformis",
"molestiformis", "shinnersii", "opaca", "crawfordii", "bebbii",
"cristatella", "projecta", "tribuloidesVtribuloides", "buffaloriver",
"teneraVechinodes", "missouriensis", "teneraVtenera", "tincta",
"festucacea", "oronensis", "muskingumensis", "bicknellii",
"merrittfernaldii", "molesta", "normalis", "ovalis3098",
"feta", "longii", "vexans", "alata", "scopariaVscoparia",
"scopariaVtessellata", "albolutescens", "suberecta", "ozarkana",
"hormathodes", "straminea", "xerantica", "athrostachya")),
nodes = list(c("alata", "albolutescens", "bebbii", "bicknellii",
"brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata",
"festucacea", "feta", "hormathodes", "hyalina", "longii",
"merrittfernaldii", "missouriensis", "molesta", "molestiformis",
"muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098",
"ozarkana", "projecta", "reniformis", "scopariaVscoparia",
"scopariaVtessellata", "shinnersii", "straminea", "suberecta",
"teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides",
"vexans", "adusta", "athrostachya", "pachystachya", "xerantica",
"macloviana"), c("alata", "albolutescens", "bebbii", "bicknellii",
"brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata",
"festucacea", "feta", "hormathodes", "hyalina", "longii",
"merrittfernaldii", "missouriensis", "molesta", "molestiformis",
"muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098",
"ozarkana", "projecta", "reniformis", "scopariaVscoparia",
"scopariaVtessellata", "shinnersii", "straminea", "suberecta",
"teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides",
"vexans"), c("bebbii", "bicknellii", "brevior", "buffaloriver",
"crawfordii", "cristatella", "cumulata", "festucacea", "hyalina",
"merrittfernaldii", "missouriensis", "molesta", "molestiformis",
"muskingumensis", "normalis", "opaca", "oronensis", "projecta",
"reniformis", "shinnersii", "teneraVechinodes", "teneraVtenera",
"tincta", "tribuloidesVtribuloides", "feta", "ovalis3098"
), c("bebbii", "bicknellii", "brevior", "buffaloriver", "crawfordii",
"cristatella", "cumulata", "festucacea", "hyalina", "merrittfernaldii",
"missouriensis", "molesta", "molestiformis", "muskingumensis",
"normalis", "opaca", "oronensis", "projecta", "reniformis",
"shinnersii", "teneraVechinodes", "teneraVtenera", "tincta",
"tribuloidesVtribuloides"), c("brevior", "hyalina", "molestiformis",
"reniformis", "shinnersii"), c("suberecta", "albolutescens",
"scopariaVscoparia", "scopariaVtessellata", "alata", "vexans",
"longii"), c("subfusca", "integra", "peucophila", "microptera",
"haydeniana", "ebenea"), c("phaeocephala", "preslii", "argyrantha"
))), .Names = c("ovales.tree", "ovales.data", "ovales.nodes"))
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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