R/allClasses.r

In seqTools: Analysis of nucleotide, sequence and quality content on fastq files.

## + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ##
##                                                                           ##
##  Project   :   seqTools                                                   ##
##  Created   :   26.August.2013                                             ##
##  Author    :   W. Kaisers                                                 ##
##  Version   :   0.9.0                                                      ##
##  File      :   allClasses.r                                               ##
##  Content   :   Declarations for all S4 classes in package                 ##
##                                                                           ##
## + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ##

.onUnload<-function(libpath) { library.dynam.unload("seqTools",libpath) }

## + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ##
setClass("Fastqq",representation(
  filenames = "character",
  probeLabel = "character",
  nFiles = "integer",
  k = "integer",
  maxSeqLen = "integer",
  kmer = "matrix",
  firstKmer = "matrix",
  nReads = "integer",
  nN = "integer",
  seqLenCount = "matrix",
  gcContent = "matrix",
  nac = "list",
  phred = "list",
  seqLen = "matrix",
  collectTime = "list"))
## + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ##

## + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ##
## END OF FILE
## + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ##