normTransform: Normalized counts transformation
In DESeq2: Differential gene expression analysis based on the negative binomial distribution
Description
Usage
Arguments
See Also
Description
A simple function for creating a DESeqTransform
object after applying: f(count(dds,normalized=TRUE) + pc).
Usage
1
normTransform(object, f = log2, pc = 1)
Arguments
object
a DESeqDataSet object
f
a function to apply to normalized counts
pc
a pseudocount to add to normalized counts
See Also
varianceStabilizingTransformation, rlog
DESeq2 documentation built on Feb. 22, 2021, 10 a.m.
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Description Usage Arguments See Also
Description
A simple function for creating a DESeqTransform
object after applying: f(count(dds,normalized=TRUE) + pc).
Usage
1 | normTransform(object, f = log2, pc = 1)
|
Arguments
object |
a DESeqDataSet object |
f |
a function to apply to normalized counts |
pc |
a pseudocount to add to normalized counts |
See Also
varianceStabilizingTransformation, rlog
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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