geneID: geneID generic

Description Usage Arguments Value Examples

View source: R/AllGenerics.R

Description

geneID generic

Usage

1
geneID(x)

Arguments

x

enrichResult object

Value

'geneID' return the 'geneID' column of the enriched result which can be converted to data.frame via 'as.data.frame'

Examples

1
2
3
4
data(geneList, package="DOSE")
de <- names(geneList)[1:100]
x <- enrichDO(de)
geneID(x)

Example output

DOSE v3.16.0  For help: https://guangchuangyu.github.io/software/DOSE

If you use DOSE in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609

  [1] "6280/6278/10232/332/4321"                                         
  [2] "4312/6279/3627/10563/4283/890/366/4902/3620"                      
  [3] "6280/6278/10232/332"                                              
  [4] "6280/6279/4751/6286"                                              
  [5] "6280/2305/9133/6279/7153/6278/6241/11065/10232/332/6286/3002/9212"
  [6] "4312/3627/10563/4283/890/3620"                                    
  [7] "4312/6279/7153/3627/820/983/10232/6362/332/6286/9212/4321/6790"   
  [8] "4312/3627/10563/890/3620"                                         
  [9] "4312/3627/10563/890/3620"                                         
 [10] "4312/4605/5080/332/2146/6790"                                     
 [11] "4312/820/983/10232/6362/332/6286/9212/4321/6790"                  
 [12] "3627/27299/6362"                                                  
 [13] "4312/6280/6279/890/5918/332"                                      
 [14] "4312/6280/3627/27299/6362/81930/4321"                             
 [15] "6280/6279/3627/27299/6362"                                        
 [16] "3627/9582/10563/6373/6362/332/3002"                               
 [17] "4312/6280/6278"                                                   
 [18] "6280/6279/3627/27299/6362"                                        
 [19] "4312/6280/6279/3002"                                              
 [20] "4312/6280/6279/3002"                                              
 [21] "4312/6280/6279/3002"                                              
 [22] "4312/6280/6279/890/5918/332"                                      
 [23] "4312/6280/6279/6362/3002"                                         
 [24] "259266/5080/1111"                                                 
 [25] "6279/366/4902"                                                    
 [26] "597/6278/3627/820/4283/6362"                                      
 [27] "4312/6280/3627/820/6362/3620"                                     
 [28] "4312/6280/6279/7153/4751/890/4085/332/6286/6790"                  
 [29] "6280/6279"                                                        
 [30] "3627/9582/6373/6362"                                              
 [31] "6279/366"                                                         
 [32] "6279/366"                                                         
 [33] "4312/6279/820/7850/4321"                                          
 [34] "4312/983/10232/6362/332/9212/4321/6790"                           
 [35] "4312/983/10232/6362/332/9212/4321/6790"                           
 [36] "4312/983/10232/6362/332/9212/4321/6790"                           
 [37] "4312/597/6278/3627/820/4283/6362/4321/3620"                       
 [38] "4312/6280/3627/6362/4321"                                         
 [39] "3627/10563/3002"                                                  
 [40] "6280/9133/6279/6241/10232/6286"                                   
 [41] "4312/7153/55872/10635/332/6286"                                   
 [42] "3627/10563/3002"                                                  
 [43] "4312/55872/10635/332/6286"                                        
 [44] "4312/55872/10635/332/6286"                                        
 [45] "6280/6278"                                                        
 [46] "4312/6280/3627/6373/820/4283/27299/6362/81930/4321/3620"          
 [47] "6279/3627/332/4321"                                               
 [48] "3627/10563/3002/10112"                                            
 [49] "332/4321"                                                         
 [50] "4312/6278/3627/6362/332/4321"                                     
 [51] "4312/6279/820/7850/332/4321"                                      
 [52] "4312/6278/3627/6362/332/4321"                                     
 [53] "4312/6278/3627/6362/332/4321"                                     
 [54] "597/6278/3627/820/4283/6362"                                      
 [55] "259266/5080/1111"                                                 
 [56] "55872/10563/332/3902"                                             
 [57] "4312/6373"                                                        
 [58] "4312/6279/820/7850/4321"                                          
 [59] "4312/55872/10635/332/6286"                                        
 [60] "4312/55872/10635/332/6286"                                        
 [61] "4312/5080"                                                        
 [62] "4312/4321"                                                        
 [63] "890/332/6286"                                                     
 [64] "4312/4283/3620"                                                   
 [65] "4312/6278/3627/6362/332/4321"                                     
 [66] "890/332"                                                          
 [67] "4312/597/6278/3627/820/4283/6362/4321/3620"                       
 [68] "6279/3627/332/4321"                                               
 [69] "890/4085"                                                         
 [70] "3627/6373/4283"                                                   
 [71] "6279/3627/332/4321"                                               
 [72] "4312/3627/4283/6362/332"                                          
 [73] "890/6286"                                                         
 [74] "3627/10563/3002"                                                  
 [75] "4312/6279/7153/890/4085/332/3887"                                 
 [76] "4312/3627/4283/6362"                                              
 [77] "4312/6279/1381/10232/6286"                                        
 [78] "4312/6280/6278"                                                   
 [79] "4312/7153/332/6286"                                               
 [80] "4312/10403/6241/4751/4085/332/366/3620"                           
 [81] "820/10232/332/3620"                                               
 [82] "4312/6279/820/7850/4321"                                          
 [83] "4605/2146/6790"                                                   
 [84] "4312/6280/6279/597/3627/332/6286/2146/4321"                       
 [85] "890/332"                                                          
 [86] "4312/4605/1381/27338/10232/4085/5080/332/2146/6790"               
 [87] "3627/9582/3669/6373/4283/7850/332/3002/3620"                      
 [88] "6278/332"                                                         
 [89] "6280/6279/5918"                                                   
 [90] "4312/6280/6279/597/3627/332/6286/2146/4321"                       
 [91] "4312/3627"                                                        
 [92] "4312/7153/6373/890/10232/4085/332/2146/1111"                      
 [93] "4312/7153/890/10232/4085/332/2146/1111"                           
 [94] "4312/332"                                                         
 [95] "4312/10403/6241/4751/4085/332/366/3620"                           
 [96] "4312/597/3627/6373/820/3620"                                      
 [97] "6280/6278"                                                        
 [98] "4312/3627/6373/820/6362/4321/3620"                                
 [99] "10563/10232/332/366"                                              
[100] "3627/4283/3620"                                                   
[101] "3627/4283/3620"                                                   
[102] "10874/7153/6241/10232/332/6286/10112"                             
[103] "7153/332"                                                         
[104] "7153/332"                                                         
[105] "4312/3627/4283/6362"                                              
[106] "4312/6362"                                                        
[107] "4312/10563/332/366/4321"                                          
[108] "3627/10563/5080/3002/10112"                                       
[109] "3627/820/6362/3620"                                               
[110] "820/332"                                                          
[111] "820/332"                                                          
[112] "3627/9582/4283/332/3002"                                          
[113] "6279/3669"                                                        
[114] "4312/10403/6241/4751/4085/332/366/3620"                           
[115] "4312/332"                                                         
[116] "4312/1381/27338/10232/4085/332/2146"                              
[117] "4312/597/3627/6373/820/3620"                                      
[118] "10635/6286"                                                       
[119] "10232/332"                                                        
[120] "10232/332"                                                        
[121] "820/10232/332/3620"                                               
[122] "4312/332"                                                         
[123] "4312/332/4321"                                                    
[124] "4312/332"                                                         
[125] "1381/10232"                                                       
[126] "1381/10232"                                                       
[127] "55872/10563"                                                      
[128] "10232/332"                                                        
[129] "6279/7153/332/3887"                                               
[130] "4312/3627/6373/820/4321"                                          
[131] "3627/4283/890/332/3620"                                           
[132] "332/366"                                                          
[133] "7153/259266/2146/1111/6790"                                       
[134] "4312/6280/6279/10232"                                             
[135] "4312/597/3627/820"                                                
[136] "6373/4283"                                                        
[137] "4312/6280/6278"                                                   
[138] "4312/6280/6278"                                                   
[139] "10874/7153/6241/6286"                                             
[140] "4312/5080"                                                        
[141] "4312/1381/27338/10232/4085/332/2146"                              
[142] "4312/5080"                                                        
[143] "3627/3669/6373/7850/3620"                                         
[144] "820/332"                                                          
[145] "10874/7153/6241/10232/6286"                                       
[146] "10563/366"                                                        
[147] "4312/332/6286"                                                    
[148] "3627/3002/4321/3620"                                              
[149] "7153/6362"                                                        
[150] "7153/6373/332"                                                    
[151] "4312/9133/7153/8140/890/10232/332/6286"                           
[152] "2305/4605/7153/4085/332/9212/6790"                                
[153] "332/3902"                                                         
[154] "3627/3002/4321/3620"                                              
[155] "6280"                                                             
[156] "332"                                                              
[157] "10232"                                                            
[158] "4312/332/366"                                                     
[159] "890/4085"                                                         
[160] "890/983/332"                                                      
[161] "890/983/332"                                                      
[162] "3627"                                                             
[163] "332"                                                              
[164] "3627"                                                             
[165] "332"                                                              
[166] "27338"                                                            
[167] "10232/332"                                                        
[168] "890/983/332"                                                      
[169] "890/332"                                                          
[170] "6278/890/332/6286/4321"                                           
[171] "4312/9133/7153/890/332/6286"                                      
[172] "6362"                                                             
[173] "7153"                                                             
[174] "7153"                                                             
[175] "332"                                                              
[176] "3627"                                                             
[177] "3627"                                                             
[178] "6280/6279/2146"                                                   
[179] "6280/10563/3002"                                                  
[180] "4312/332/9212/6790"                                               
[181] "890/332"                                                          
[182] "4312"                                                             
[183] "4312"                                                             
[184] "4312"                                                             
[185] "4312"                                                             
[186] "3627"                                                             
[187] "55872"                                                            
[188] "4312/1381/27338/10232/4085/332/2146"                              
[189] "1381/11065/332/2146"                                              
[190] "4312"                                                             
[191] "3627"                                                             
[192] "6362"                                                             
[193] "10563"                                                            
[194] "4312"                                                             
[195] "4312/332/366/4321"                                                
[196] "259266/5080/1111"                                                 
[197] "332"                                                              
[198] "3620"                                                             
[199] "332/366"                                                          
[200] "1381/11065/332/2146"                                              
[201] "4312/5080"                                                        
[202] "890/983/332"                                                      
[203] "890/983/332"                                                      
[204] "4605/7153/4085/332/9212/6790"                                     
[205] "4605/7153/4085/332/9212/6790"                                     
[206] "4902"                                                             
[207] "3002"                                                             
[208] "3627"                                                             
[209] "4312/6280/6279/3627/10563/10232/3620"                             
[210] "4312/332"                                                         
[211] "10563"                                                            
[212] "10563"                                                            
[213] "10563"                                                            
[214] "4312"                                                             
[215] "3620"                                                             
[216] "3627"                                                             
[217] "6279/3627"                                                        
[218] "4312/10563/7850/332/366/4321"                                     
[219] "4902"                                                             
[220] "4312"                                                             
[221] "332"                                                              
[222] "332"                                                              
[223] "10232/332"                                                        
[224] "4312/6280/6279/3627/10563/10232/3620"                             
[225] "6279"                                                             
[226] "4312"                                                             
[227] "4312"                                                             
[228] "3627/4283"                                                        
[229] "3627"                                                             
[230] "332"                                                              
[231] "2305"                                                             
[232] "1381"                                                             
[233] "4312"                                                             
[234] "1381"                                                             
[235] "3627"                                                             
[236] "3627/6373/4283"                                                   
[237] "7153/259266/332/2146/1111/6790"                                   
[238] "55872"                                                            
[239] "55872"                                                            
[240] "10563/3002"                                                       
[241] "3627/4283"                                                        
[242] "4312/4085/2146/1111"                                              
[243] "6278"                                                             
[244] "6278"                                                             
[245] "366"                                                              
[246] "820/332"                                                          
[247] "332"                                                              
[248] "332"                                                              
[249] "332"                                                              
[250] "6279/7153"                                                        
[251] "7368"                                                             
[252] "10563"                                                            
[253] "366"                                                              
[254] "4312/6280/6279/820/4321"                                          
[255] "3627/4283"                                                        
[256] "4312/6280/6279/820/4321"                                          
[257] "4312/6280/3627/9415/3002"                                         
[258] "10874/6286"                                                       
[259] "2305"                                                             
[260] "4312/332/3902/6790"                                               
[261] "1844"                                                             
[262] "597/7153/10563/890/6362/6790"                                     
[263] "4312/6280/6279/820/4321"                                          
[264] "332"                                                              
[265] "6790"                                                             
[266] "3627"                                                             
[267] "10112"                                                            
[268] "332"                                                              
[269] "332"                                                              
[270] "6278"                                                             
[271] "6278"                                                             
[272] "10563"                                                            
[273] "4312/3627/366/3620"                                               
[274] "4312/6362"                                                        
[275] "4312/6280/9415/3002"                                              
[276] "366"                                                              
[277] "6362"                                                             
[278] "332"                                                              
[279] "81930"                                                            
[280] "366"                                                              
[281] "4321"                                                             
[282] "332/2146"                                                         
[283] "4321"                                                             
[284] "6362"                                                             
[285] "3627"                                                             
[286] "5080"                                                             
[287] "332"                                                              
[288] "10232"                                                            
[289] "3627"                                                             
[290] "3627/6373/1844/4283/366"                                          
[291] "4085/2146/1111"                                                   
[292] "6280/6279/3832"                                                   
[293] "4085"                                                             
[294] "10874/6280/6279/366"                                              
[295] "6362/332"                                                         
[296] "597/10563/6790"                                                   
[297] "4321"                                                             
[298] "4312"                                                             
[299] "1844"                                                             
[300] "2305/10563/332"                                                   
[301] "1844"                                                             
[302] "4312/332"                                                         
[303] "259266/820"                                                       
[304] "10874/6280/6279/366"                                              
[305] "4312/332/3902/6790"                                               
[306] "3002"                                                             
[307] "8685/820"                                                         
[308] "4312/332/3902/6790"                                               
[309] "7153"                                                             
[310] "7153"                                                             
[311] "6362"                                                             
[312] "6280/6278/4283/983/8208"                                          
[313] "6280/6278/4283/983/8208"                                          
[314] "10874/6280/6279/366"                                              
[315] "4312/332"                                                         
[316] "332"                                                              
[317] "6362/332"                                                         
[318] "4312"                                                             
[319] "4312"                                                             
[320] "5080"                                                             
[321] "5080"                                                             
[322] "820"                                                              
[323] "3002"                                                             
[324] "820"                                                              
[325] "3002"                                                             
[326] "332"                                                              
[327] "332"                                                              
[328] "4312"                                                             
[329] "6362"                                                             
[330] "4312"                                                             
[331] "332"                                                              
[332] "3002"                                                             
[333] "3627"                                                             
[334] "366"                                                              
[335] "5080"                                                             
[336] "6362"                                                             
[337] "332"                                                              
[338] "6373"                                                             
[339] "4312/6279/3627/332"                                               
[340] "4312/6279/3627/332"                                               
[341] "4312/10563"                                                       
[342] "6279"                                                             
[343] "6373"                                                             
[344] "4312/6279/3627/332"                                               
[345] "7850/332"                                                         
[346] "4312"                                                             
[347] "8140"                                                             
[348] "332"                                                              
[349] "3627"                                                             
[350] "4312"                                                             
[351] "6278"                                                             
[352] "7368/6362/332"                                                    
[353] "6278"                                                             
[354] "6278"                                                             
[355] "6278"                                                             
[356] "1381"                                                             
[357] "4312/5163"                                                        
[358] "4312"                                                             
[359] "4312/332"                                                         
[360] "3627"                                                             
[361] "4312/332"                                                         
[362] "3627/820/332/1111"                                                
[363] "1381"                                                             
[364] "3627"                                                             
[365] "6278"                                                             
[366] "332"                                                              
[367] "10563"                                                            
[368] "3627"                                                             
[369] "366"                                                              
[370] "332"                                                              
[371] "3627"                                                             
[372] "4312"                                                             
[373] "3627"                                                             
[374] "8685/820"                                                         
[375] "3620"                                                             
[376] "1111"                                                             
[377] "4312"                                                             
[378] "332"                                                              
[379] "332"                                                              
[380] "332"                                                              
[381] "332"                                                              
[382] "4312"                                                             
[383] "3627"                                                             

DOSE documentation built on Nov. 8, 2020, 7:48 p.m.