show-methods: method extensions to show for diffAnalysisClass objects.

In MicrobiotaProcess: an R package for analysis, visualization and biomarker discovery of microbiome

Description

method extensions to show for diffAnalysisClass objects.

Usage

## S4 method for signature 'diffAnalysisClass'
show(object)

Arguments

object

object, 'diffAnalysisClass' class

Value

print info

Author(s)

Shuangbin Xu

Examples

# don't run in examples
#data(kostic2012crc)
#kostic2012crc
#head(phyloseq::sample_data(kostic2012crc),3)
#kostic2012crc <- phyloseq::rarefy_even_depth(kostic2012crc,rngseed=1024)
#table(phyloseq::sample_data(kostic2012crc)$DIAGNOSIS)
#set.seed(1024)
#diffres <- diff_analysis(kostic2012crc, classgroup="DIAGNOSIS",
#                        mlfun="lda", filtermod="fdr",
#                        firstcomfun = "kruskal.test",
#                        firstalpha=0.05, strictmod=TRUE, 
#                        secondcomfun = "wilcox.test",
#                        subclmin=3, subclwilc=TRUE,
#                        secondalpha=0.01, lda=3)
#show(diffres)

MicrobiotaProcess documentation built on April 18, 2021, 6 p.m.