gcContent: Calculate The Overall GC-Content
In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System
Description
Usage
Arguments
Details
Value
Author(s)
Description
This function calculates the GC-content summarized over all sequences.
Usage
1
gcContent(object)
Arguments
object
An object of class DNAStringSet, ShortRead or SFFContainer.
Details
The GC-content is calculated as follows:
(#G + #C / #G + #C + #A + #T) * 100
Where #G is the number of base G in all sequences.
Value
A numeric vector of length one containing the overall GC-content.
Author(s)
Christian Ruckert
R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Usage Arguments Details Value Author(s)
Description
This function calculates the GC-content summarized over all sequences.
Usage
1 | gcContent(object)
|
Arguments
object |
An object of class DNAStringSet, ShortRead or SFFContainer. |
Details
The GC-content is calculated as follows:
(#G + #C / #G + #C + #A + #T) * 100
Where #G is the number of base G in all sequences.
Value
A numeric vector of length one containing the overall GC-content.
Author(s)
Christian Ruckert
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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