calcShrinkParameters: Calculate shrinkage parameters
In metagenomeSeq: Statistical analysis for sparse high-throughput sequencing
Description
Usage
Arguments
See Also
View source: R/fitZeroLogNormal.R
Description
Calculate the shrunken variances and variance of parameters of interest across features.
Usage
1
calcShrinkParameters(fit, coef, mins2, exclude = NULL)
Arguments
fit
A matrix of fits as outputted by calcZeroComponent or calcPosComponent
coef
Coefficient of interest
mins2
minimum variance estimate
exclude
Vector of features to exclude when shrinking
See Also
fitZeroLogNormal fitFeatureModel
metagenomeSeq documentation built on Nov. 8, 2020, 5:34 p.m.
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Description Usage Arguments See Also
View source: R/fitZeroLogNormal.R
Description
Calculate the shrunken variances and variance of parameters of interest across features.
Usage
1 | calcShrinkParameters(fit, coef, mins2, exclude = NULL)
|
Arguments
fit |
A matrix of fits as outputted by calcZeroComponent or calcPosComponent |
coef |
Coefficient of interest |
mins2 |
minimum variance estimate |
exclude |
Vector of features to exclude when shrinking |
See Also
fitZeroLogNormal fitFeatureModel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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