chromHMM_demo_overlaps_gr: overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.

In seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data

Description

overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.

Format

a GRanges object of length 98 with 10 logical metadata columns, 1 per state.

Details

part of chromHMM_demo_data

the result of ssvOverlapIntervalSets() on MCF10A CTCF peaks and MCF7 chromHMM states with use_first = TRUE

first (the MCF10A peaks) and no_hit columns have been removed each remaining column represents MCF10A peaks overlapping with a state.

seqsetvis documentation built on Nov. 8, 2020, 5:57 p.m.