DE-method: Get DE

In transcriptogramer: Transcriptional analysis based on transcriptograms

Description

Gets the content of the DE slot of an object of class Transcriptogram.

Usage

DE(object)

## S4 method for signature 'Transcriptogram'
DE(object)

Arguments

object

An object of class Transcriptogram.

Value

This method returns the content of the DE slot of an object of class Transcriptogram.

Author(s)

Diego Morais

See Also

Hs900, association, transcriptogramPreprocess

Examples

transcriptogram <- transcriptogramPreprocess(association, Hs900, 50)
## Not run: 
transcriptogram <- transcriptogramStep1(transcriptogram, GSE9988, GPL570)
transcriptogram <- transcriptogramStep2(transcriptogram)
levels <- c(rep(FALSE, 3), rep(TRUE, 3))
transcriptogram <- differentiallyExpressed(transcriptogram, levels, 0.01)
DE(transcriptogram)

## End(Not run)

transcriptogramer documentation built on Nov. 8, 2020, 8:17 p.m.