Man pages for BIO-RSG/oceancolouR
Various Functions for Satellite and Data Analysis

add_char_to_textlinesAdd a string to the end of each line in a file.
add_matricesMatrix addition
asinh_transasinh ggplot scale transformation
avg_columnsCondense a matrix by averaging selected columns
binlatlonGet bin number, longitude, latitude
box_funExtract a matchup box from a raster
ciColor Index Algorithm
collapse_windowGet single value from pixel window
conv_rrs_to_555Convert green Rrs to Rrs at 555nm
create_blank_rasterBlank raster
dategrpDate group numbers
days_vectorList days of the year within a month
deg_to_dmConvert a latitude or longitude from decimal degrees to...
deg_to_dmsConvert a latitude or longitude from decimal degrees to...
dms_to_degConvert a latitude or longitude to decimal degrees
download_ocDownload ocean colour files
eof_chlEOF chlorophyll-a model
filtered_meanCalculate filtered mean, stdev, and CV
find_factorsFind all the factors of a positive integer
find_lineCompute line parameters
gen_bin_gridGenerate bin grid for viewing
gen_nrowsGet number of rows on L3b global grid for a given resolution
gen_start_binGenerate start bin vector
geoMeanGeometric mean
geoSDGeometric standard deviation
get_aphstarGet phytoplankton absorption coefficients (aphstar) for...
get_awGet water absorption coefficients (aw) for selected wavebands
get_bbwGet water backscattering coefficients (bbw) for selected...
get_binsGet bin info at 4km and 9km resolution
get_brGet band ratios
get_ci_bandsGet wavebands to use in the color index algorithm
get_ci_coefsGet coefficients to use in the Hu chlorophyll-a algorithm.
get_closest_binsGiven lat/lon, find closest bin(s)
get_doysGet start days, given interval
get_edgesExtract the edges of a matrix
get_flag_dataGet flag data
get_gsGSM gs coefficients
get_gsm_IOPexpsGet predefined IOP exponents for GSM in specific regions (NWA...
get_imglist_l1Get L1A filenames
get_imglist_multiGet L2 / L3 filenames
get_lm_statsGet model object results
get_matchExtract closest points from regular 2d grid
get_ocx_bandsGet OCX wavebands for a sensor
get_ocx_coefsGet predefined coefficients for OCx
get_rangesGet ggplot scale ranges
get_seasonGet season name
gmt_palettesColour Palettes
gsmGSM algorithm for MODIS-Aqua, SeaWiFS, or VIIRS-SNPP
haversineHaversine
huHu chlorophyll-a algorithm
lmpGet p-value
make_raster_mapPlot a georeferenced raster on a map
monotonic_checkCheck if a vector is monotonically increasing/decreasing
nc_image_statsGet percent coverage of netCDF satellite image
ociCalculate OCI, the chlorophyll-a algorithm that blends OCx...
ocxOCX algorithm
ocx_sseOCx SSE
optimize_ocx_coefsOCX coefficient optimization
order_stringOrder the characters in a single string
pad0Pad a string or number with zeroes in front.
plot_pancanPlot panCanadian L3b file
plot_swathPlot satellite swath boundary
plus_minusGet vector surrounding number
pos_angleConvert an angle to its equivalent value in the range 0 to...
properCapitalization
qaaQAA algorithm, version 6
raster_to_matrixConvert raster stack to matrix
read_h5_L3bRead NASA OBPG level-3 binned file contents
read_h5_l3b_namesGet list of variable names, dimensions, and datatypes from an...
read_pixExRead pixEx
res_code_to_distGiven L3b data resolution code, get distance
rm_dupRemove consecutive duplicate characters in a string
rmseCalculate RMSE
rrs_above_to_below_sea_levelConvert Rrs below sea level
same_scalesMake scales of list of ggplot objects the same
select_groupsSelect groups in dplyr
separate_flagsSeparate flag masks
set_limitsSet values outside range to upper/lower limits
shifted_gaussianShifted Gaussian Curve
shift_lineShift line
sinh_transsinh ggplot scale transformation
sparkle_fillSparkle fill: fill small holes in raster or matrix
var_to_rastGenerate 2D grid of L3b data for viewing
vector_errorsCalculate error vectors
vector_statsCalculate statistics
week88-day week number
week8_dateDate from 8-day week number
BIO-RSG/oceancolouR documentation built on April 30, 2024, 7:54 a.m.