dot-geneXtender: Function for formatting data to be called by C function.

Description Usage Arguments Value Note

Description

Formats genome-data based on upstream and organism for .C caller function. Not to be run by user.

Usage

1
.geneXtender(upstream, organism, ret = FALSE)

Arguments

upstream

Extension upstream of each gene.

organism

Object name assigned from readGFF() command.

ret

Logical that designates if the output is written in R or only as a .bed file

Value

The gene coordinates extended by the designated upstream. In .bed file format.

A data.table formatted version of the data depending on the ret logical.

Note

Not to be run by the user


Bohdan-Khomtchouk/geneXtendeR documentation built on June 9, 2019, 2:53 a.m.