pdacData: Tissue-CyCIF data of Pancreatic Ductal Adenocarcinoma (PDAC)

In FertigLab/scatterHatch: Creates hatched patterns for scatterplots

Tissue-CyCIF data of Pancreatic Ductal Adenocarcinoma (PDAC)

Description

Single-cell resolution of 4 cellular compartments in a human Pancreatic Dual Adenocarcinoma sample that spans across three distinct tissues: the pancreas, small intestine, and tumor. Contains cartesian coordinates of each cell along with the frame it was identified from in t-CyCIF imaging.

Usage

data(pdacData)

Format

A data frame with 158159 rows and 3 variables:

frame

10x frame from t-CyCIF imaging. Used to identify tissue type of cell.

Xt

Cartesian x-coordinate of cell across entire tissue sample (across all frames).

Yt

Cartesian y-coordinate of cell across entire tissue sample (across all frames)

Source

Shortened version of t-CyCIF single-cell data of Pancreatic Ductal Adenocarcinoma (PDAC) resection specimen from Lin et. al with only the cartesian coordinates and frames each cell is in present.

Entire dataset can be downloaded from http://lincs.hms.harvard.edu/wordpress/wp-content/uploads/2017/05/rawdata_Figure78_PDAC.zip

References

Lin et al. (2018) eLife 2018;7:e31657 (eLife)

FertigLab/scatterHatch documentation built on July 13, 2022, 9:23 p.m.