alns: Get alignments

In HLindsay/CrispRVariants: Tools for counting and visualising mutations in a target location

Description

Return alignments from an object that contains them. For a CrisprSet object, these are truncated, non-chimeric alignments

Usage

alns(obj, ...)

## S4 method for signature 'CrisprSet'
alns(obj, ...)

Arguments

obj	An object containing aligned sequences
...	additional arguments

Value

A GAlignmentsList of consensus sequences on the positive strand.

Author(s)

Helen Lindsay

Examples

data("gol_clutch1")
alns <- alns(gol)

HLindsay/CrispRVariants documentation built on May 28, 2019, 12:40 p.m.