README.md

In Shians/NanoMethViz: Visualise methylation data from Oxford Nanopore sequencing

NanoMethViz

NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore sequencing.

Installation

You can install NanoMethViz from Bioconductor with:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NanoMethViz")

To install the latest developmental version, use:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install(version='devel')

BiocManager::install("NanoMethViz")

Usage

This package currently works with data from dorado, megalodon, nanopolish and f5c, for information on how to use the package, please refer to the Users Guide.

Examples

MDS Plot

The MDS plot is used to visualise differences in the methylation profiles of multiple samples.

Feature Aggregation

The feature aggregation plot can average the methylation profiles across a set of features.

Region Methylation Plot

The region methylation plot can visualise the methylation profile of a region of interest. As well as provide a heatmap of the methylation along individual reads.

License

This project is licensed under Apache License, Version 2.0.

Shians/NanoMethViz documentation built on May 24, 2024, 4:11 a.m.