abstractionLayer: abstractionLayer

Description Usage Arguments Details Value Examples

Description

abstractionLayer

Usage

1

Arguments

object

of class decisionMatrix

Details

In the abstraction layer one may indicate if a functional category should not be used for scoring states. This is done by placing an asterisk at the end of it's name (e.g. Regulatory*). One may also specify that a certain type of functional category never be split into smaller units by its overlapping with other features. This is done by placing the name of the functional category in square brackets (e.g. [Core])

Value

a list; A description of the relationship between the precise data type (e.g. a chromatin mark like H3K27ac) and feature describing the functional category in the decision.matrix (e.g. Regulatory).

Examples

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load(system.file("extdata", "poised.promoter.model.rda", package = "StatePaintR"))
poised.promoter.model
abstractionLayer(poised.promoter.model)

Simon-Coetzee/StatePaintR documentation built on May 9, 2019, 1:31 p.m.