mds: An example data set
In aiminy/PathwaySplice: An R Package for Adjusting Bias in Gene Set Enrichment Analysis

a data set for example data set

data(mds)

A data frame with 23520 rows and 17 variables

geneID. Gene ID
chr. Chromosome information
start. Starting position
end. End position
strand. Strand information
baseMean. BaseMean based on all samples
geneWisePadj. GeneWise FDR calculated using smallest p value within each gene
mostSigID. The feature that have smallest p-value within gene
mostSigPadjust. p-value for the most significant feature
numExons. Number of exons within gene
numKnown. Number of splicing junction within gene
numNovel. Number of novel splicing junction within gene
exonsSig. Number of significant exons
knownSig. Number of significant splicing junction
novelSig. Number of significant novel splicing junction
numFeatures. A list that includes number of exons,number of splicing junction and number of novel splicing junction within gene
numSig. A list that includes number of significant exons,number of significant splicing junction and number of significant novel splicing junction within gene

a data set 23520 rows and 17 variables

aiminy/PathwaySplice documentation built on May 10, 2019, 7:38 a.m.

aiminy/PathwaySplice index

README.md

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