import.bedmolecule: import.bedmolecule
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
View source: R/ImportMethods.R
import.bedmolecule R Documentation
import.bedmolecule
Description
Imports a BED file where each line counts for one molecule in a
GRanges object where each line represents one nucleotide.
Usage
import.bedmolecule(filepath)
Arguments
filepath
The path to the BED file.
Value
Returns a CTSS object.
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.CTSS(),
import.bam(),
import.bam.ctss(),
import.bedCTSS(),
import.bedScore(),
loadFileIntoGPos(),
moleculesGR2CTSS()
Examples
# TODO: add exmaple file
# import.BED(system.file("extdata", "example.bed", package = "CAGEr"))
charles-plessy/CAGEr documentation built on May 24, 2024, 6:04 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/ImportMethods.R
| import.bedmolecule | R Documentation |
import.bedmolecule
Description
Imports a BED file where each line counts for one molecule in a GRanges object where each line represents one nucleotide.
Usage
import.bedmolecule(filepath)
Arguments
filepath |
The path to the BED file. |
Value
Returns a CTSS object.
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.CTSS(),
import.bam(),
import.bam.ctss(),
import.bedCTSS(),
import.bedScore(),
loadFileIntoGPos(),
moleculesGR2CTSS()
Examples
# TODO: add exmaple file
# import.BED(system.file("extdata", "example.bed", package = "CAGEr"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.