Files in d3b-center/annoFuse

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

.Rbuildignore

.github/ISSUE_TEMPLATE/data-question.md .github/ISSUE_TEMPLATE/feature-request.md .github/ISSUE_TEMPLATE/report-issue.md .github/PULL_REQUEST_TEMPLATE.md

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md

R/.DS_Store

R/.Rapp.history

R/aggregate_fusion_calls.R R/annoFuse-pkg.R R/annoFuse-utils.R R/annoFuse_single_sample.R R/annotate_fusion_calls.R R/called_by_n_callers.R R/expression_filter_fusion.R R/fusion_driver.R R/fusion_filtering_QC.R R/fusion_multifused.R R/fusion_standardization.R R/get_Pfam_domain.R R/groupcount_fusion_calls.R R/plot_breakpoints.R R/plot_recurrent_fusions.R R/plot_recurrent_genes.R R/plot_summary.R R/reportFuse.R R/samplecount_fusion_calls.R R/shinyFuse.R R/theme_publication.R R/zscored_annotation.R README.md

annofuse.Rproj

inst/extdata/.DS_Store

inst/extdata/annoFuse_overview.txt

inst/extdata/content_about.md inst/extdata/howto_datainput.md inst/extdata/report_template_annoFuse.Rmd

inst/www/help_dataformats_minimalexample.png

man/.DS_Store

man/.Rapp.history

man/aggregate_fusion_calls.Rd man/annoFuse-pkg.Rd man/annoFuse_single_sample.Rd man/annotate_fusion_calls.Rd man/called_by_n_callers.Rd man/expression_filter_fusion.Rd man/fusion_driver.Rd man/fusion_filtering_QC.Rd man/fusion_multifused.Rd man/fusion_standardization.Rd man/get_Pfam_domain.Rd man/groupcount_fusion_calls.Rd man/plot_breakpoints.Rd man/plot_recurrent_fusions.Rd man/plot_recurrent_genes.Rd man/plot_summary.Rd man/read_arriba_calls.Rd man/read_starfusion_calls.Rd man/reportFuse.Rd man/samplecount_fusion_calls.Rd man/shape_output.Rd man/shinyFuse.Rd man/theme_publication.Rd man/zscored_annotation.Rd tests/testthat.R tests/testthat/test-aggregate_fusion_calls.R tests/testthat/test-annoFuse.R tests/testthat/test-annoFuse_single_sample.R tests/testthat/test-annotate_fusion_calls.R tests/testthat/test-called_by_n_callers.R tests/testthat/test-expression_filter_fusion.R tests/testthat/test-fusion_driver.R tests/testthat/test-fusion_filtering_QC.R tests/testthat/test-fusion_multifused.R tests/testthat/test-fusion_standardization.R tests/testthat/test-get_Pfam_domain.R tests/testthat/test-groupcount_fusion_calls.R tests/testthat/test-plot_breakpoints.R tests/testthat/test-plot_recurrent_fusions.R tests/testthat/test-plot_recurrent_genes.R tests/testthat/test-reportFuse.R tests/testthat/test-samplecount_fusion_calls.R tests/testthat/test-shinyFuse.R tests/testthat/test-zscored_annotation.R

vignettes/.DS_Store

vignettes/.build.timestamp

vignettes/Figure_1.png

vignettes/Summary.pdf vignettes/TCGA_validation.Rmd vignettes/putative_driver_filtering.Rmd vignettes/singleSampleRun.Rmd

d3b-center/annoFuse documentation built on Feb. 21, 2023, 1:06 a.m.