barcode_binary_heatmap: Barcode Binary Heatmap

Description Usage Arguments Value Examples

View source: R/barcode_binary_heatmap.R

Description

Creates a binary heatmap showing the absence or presence of new clones in samples ordered from L to R in the SummarizedExperiment.

Usage

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barcode_binary_heatmap(
  your_SE,
  plot_labels = NULL,
  threshold = 0,
  your_title = NULL,
  label_size = 12,
  return_table = FALSE
)

Arguments

your_SE

A Summarized Experiment object.

plot_labels

Vector of x axis labels. Defaults to colnames(your_SE).

threshold

Clones with a proportion below this threshold will be set to 0.

your_title

The title for the plot.

label_size

The size of the column labels.

return_table

Logical. Whether or not to return table of barcode sequences with their presence or absence in each sample indicated as a 1 or 0 resepctively in the value column column.

Value

Displays a binary heat map in the current plot window. Or if return_table is set to TRUE, returns a dataframe indicating the presence or absence of each barcode in each sample.

Examples

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dunbarlabNIH/barcodetrackR documentation built on April 26, 2021, 6:20 p.m.