genomic_corr_sintersect: Intersection between two sets of genomic regions
In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Intersection between two sets of genomic regions
Usage
1
genomic_corr_sintersect(query, reference, background = NULL)
Arguments
query
genomic region 1, a GRanges object
reference
genomic region 2, a GRanges object
background
subset of regions that should be only looked into, a GRanges object
Details
It calculates the total length of overlapped regions in query.
Be careful with the strand in your GRanges object!
Value
A single correlation value.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
See Also
Examples
1
2
3
gr1 = GRanges(seqnames = "chr1", ranges = IRanges(c(1, 5), c(3, 8)))
gr2 = GRanges(seqnames = "chr1", ranges = IRanges(c(2, 6), c(4, 8)))
genomic_corr_sintersect(gr1, gr2)
eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Intersection between two sets of genomic regions
Usage
1 | genomic_corr_sintersect(query, reference, background = NULL)
|
Arguments
query |
genomic region 1, a |
reference |
genomic region 2, a |
background |
subset of regions that should be only looked into, a |
Details
It calculates the total length of overlapped regions in query.
Be careful with the strand in your GRanges object!
Value
A single correlation value.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
See Also
Examples
1 2 3 | gr1 = GRanges(seqnames = "chr1", ranges = IRanges(c(1, 5), c(3, 8)))
gr2 = GRanges(seqnames = "chr1", ranges = IRanges(c(2, 6), c(4, 8)))
genomic_corr_sintersect(gr1, gr2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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