readsangerseq: Read Scf or ABIF Files

In jonathonthill/sangerseqR: Tools for Sanger Sequencing Data in R

Read Scf or ABIF Files

Description

This is a convienience function for reading Scf or ABIF files into a sangerseq object, which can be used by the other sangerseq package functions. It is equivalent to calling read.scf or read.abif as appropriate and then calling sangerseq.

Usage

readsangerseq(filename)

Arguments

filename

Location of the file.

Value

sangerseq s4 object

See Also

read.abif, read.scf, abif, scf, sangerseq

Examples

hetsangerseq <- readsangerseq(system.file("extdata", 
                                          "heterozygous.ab1", 
                                          package = "sangerseqR"))
str(hetsangerseq)
#same for scf files
homosangerseq <- readsangerseq(system.file("extdata", 
                                           "homozygous.scf", 
                                           package = "sangerseqR"))
str(homosangerseq)

jonathonthill/sangerseqR documentation built on July 1, 2023, 4:55 p.m.