DEGreport-deprecated: Deprecated functions in package DEGreport
In lpantano/DEGreport: Report of DEG analysis
DEGreport-package R Documentation
Deprecated functions in package DEGreport
Description
These functions are provided for compatibility with older versions
of DEGreport only and will be defunct at the next release.
Details
The following functions are deprecated and will be made defunct;
use the replacement indicated below:
degRank, degPR, degBIcmd, degBI, degFC, degComb, degNcomb: DESeq2::lcfShrink.
This function was trying to avoid big FoldChange
in variable genes. There are other methods nowadays like lcfShrink function.
DEGreport
Author(s)
Maintainer: Lorena Pantano lorena.pantano@gmail.com
Other contributors:
John Hutchinson [contributor]
Victor Barrera [contributor]
Mary Piper [contributor]
Radhika Khetani [contributor]
Kenneth Daily [contributor]
Thanneer Malai Perumal [contributor]
Rory Kirchner [contributor]
Michael Steinbaugh [contributor]
Ivo Zeller [contributor]
See Also
Useful links:
lpantano/DEGreport documentation built on Feb. 28, 2024, 12:01 a.m.
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| DEGreport-package | R Documentation |
Deprecated functions in package DEGreport
Description
These functions are provided for compatibility with older versions of DEGreport only and will be defunct at the next release.
Details
The following functions are deprecated and will be made defunct; use the replacement indicated below:
degRank, degPR, degBIcmd, degBI, degFC, degComb, degNcomb: DESeq2::lcfShrink. This function was trying to avoid big FoldChange in variable genes. There are other methods nowadays like lcfShrink function. DEGreport
Author(s)
Maintainer: Lorena Pantano lorena.pantano@gmail.com
Other contributors:
John Hutchinson [contributor]
Victor Barrera [contributor]
Mary Piper [contributor]
Radhika Khetani [contributor]
Kenneth Daily [contributor]
Thanneer Malai Perumal [contributor]
Rory Kirchner [contributor]
Michael Steinbaugh [contributor]
Ivo Zeller [contributor]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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